[khmer] Using khmer on paired-end Illumina data set

[Mamoon Rashid]

Dear khmer users,
Please let me know the easy way to reduce my dataset (13.9 m PE reads)
which shows a lot of duplicates in the FastQC plots (attached). This
resulted into very fragmented assembly using velvet.
Any suggestions are most welcome.
Best regards
Mamoon


-- 
*Mamoon Rashid, PhD*
Post-Doctoral Fellow
Marine Microbial Ecology Lab
Red Sea Research Center
4700 King Abdullah University of Science and Technology (KAUST)
Room 2217-WS03, Ibn Al-Haytham Building (2)
4700 *King* *Abdullah* *University* *of* *Science* *and* *Technology*
Thuwal 23955-6900, Kingdom of Saudi Arabia
Office: +966 (0) 2 808-2671
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