[khmer] Fwd: khmer compilation issues

C. Titus Brown ctb at msu.edu
Mon Mar 11 10:04:41 PDT 2013


Read below -- I've never seen this error before; could it be LOCALE-setting dependent, maybe?

this post: http://gcc.gnu.org/ml/gcc-help/2011-01/msg00270.html

suggests that something is misinstalled, possibly glibc...

best,
--titus

Begin forwarded message:

> From: <vidhya.jagannathan at vetsuisse.unibe.ch>
> Subject: khmer compilation issues
> Date: March 8, 2013 4:11:46 PM EST
> To: <ctb at msu.edu>
> 
> Hello
> 
> While reading your paper titled "A Reference-Free Algorithm for Computational Normalization of Shotgun Sequencing Data" and trying out to compile the software tools mentioned in that paper I stumbled upon a problem detailed here (http://pastie.org/6424706)
> 
> The server environment is Scientific Linux 64 bit with GCC 4.4.
> 
> Have you or your team tested the code on 64 bit environment?  Can you help me if you understand where the problem would be from seeing the make log in the above link ?
> 
> Thank you
> 
> Regards
> Vidhya 
> --
> Dr. Vidhya Jagannathan
> Bioinformatician
> Institute of Genetics
> University of Bern
> Bremgartenstrasse 109a, Postfach 8466
> 3001 Bern
> Switzerland
> 
> 
> 

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