[khmer] Questions about abundance-dist-single.py

Tamer Mansour drtamermansour at gmail.com
Sun Dec 22 20:28:49 PST 2013


Hi,
I have couple questions about the "abundance-dist-single.py"
1) The input file: should I concatenate the single reads files to the
interleaved paired-ended files?
2) Does the '-b' option increase or decrease the chance of false positive
results? is not recommended to be used?
3) Does the '-savehash' option requires increasing the job resources
(either time or ram)?

Thank you

Tamer
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