[khmer] Problems in following The Eel Pond mRNAseq Tutorial

C. Titus Brown ctb at msu.edu
Wed Dec 11 15:26:21 PST 2013

Hi Tamer,

all of this software is installed on the HPC, but I'm not terribly
familiar with how to run it there.  You should talk to Tracy Teal
tkteal at msu.edu about HPC-specific instructions.


On Tue, Dec 10, 2013 at 06:33:24PM -0500, Tamer Mansour wrote:
> Hi,
> I am trying to follow  The Eel Pond mRNAseq Tutorial to do my analysis. The
> tutorial is assuming that the analysis is done on Amazon cloud. For
> software installation step, the 1st step is always changing the path to
> /root or /usr/local/share. Doing this on HPCC will always give access
> denial error. Instead I tried to do the installation in my local bin folder
> however the setup of screed gives me a similar error because it try to
> create  /usr/lib/python2.6/site-packages/screed.
> How can I go around this !?
> Regards
> Tamer

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C. Titus Brown, ctb at msu.edu

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