[khmer] fastq output - filter-abund.py

[C. Titus Brown]

Hi Paul,

filter-abund.py will output fastq if fastq is fed in.  Or, at least, it
*should* :). Are you using the latest version, 0.7.1, from pypi, OR
the latest 'master' branch?

(The default git clone is of 'legacy' which has caused others some confusion.)

thanks,
--titus

On Thu, Dec 05, 2013 at 02:15:56PM +0100, Paul Johnston wrote:
> I think I remember there being some support for fastq output from  
> filter-abund.py but, now that I want to use it, I cannot find any trace  
> of it. Any suggestions?
>
> Cheers,
> Paul
>
> -- 
> Paul R. Johnston
> Postdoctoral Research Associate
> Freie Universit?t Berlin
> Institut f?r Biologie
> K?nigin-Luise-Stra?e 1-3
> 14195 Berlin
> Phone:  +49(0)30 838 54692
> Email:  Paul.Johnston at fu-berlin.de
> Web:    http://userpage.fu-berlin.de/perugolate/homepage/index.html
>
>
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-- 
C. Titus Brown, ctb at msu.edu