[cartwheel-svn] Revision 234 [All]

[Commit messages for Cartwheel.]

Revision: 234
Author:   t
Date:     Mon, 28 May 2007 13:07:05 -0700

Log message:
STABLE: merge from r233.

highlights:

 * seqcomp export functionality
 * biopython dependency removal => my blastparser
 * CachingManager fix



Changed paths:
M    branches/stable/cartwheel-server/bin/canal-scgi-server
M    branches/stable/cartwheel-server/bin/canal.fcgi
M    branches/stable/cartwheel-server/bin/run-python
M    branches/stable/cartwheel-server/config.rc
M    branches/stable/cartwheel-server/doc/INSTALL.html
M    branches/stable/cartwheel-server/doc/INSTALL.txt
A +  branches/stable/cartwheel-server/lib/blastparser.py
M    branches/stable/cartwheel-server/lib/cartwheel/__init__.py
M    branches/stable/cartwheel-server/lib/cucumber/Manager.py
D    branches/stable/cartwheel-server/lib/formats/biopy_handlers.py
A +  branches/stable/cartwheel-server/lib/formats/blast_handlers.py
M    branches/stable/cartwheel-server/lib/formats/handlers.py
M    branches/stable/cartwheel-server/lib/programs/__init__.py
M    branches/stable/cartwheel-server/lib/test_utils.py
M    branches/stable/cartwheel-server/tests/base.test_list
M    branches/stable/cartwheel-server/tests/batchqueue.test_list
M    branches/stable/cartwheel-server/tests/functional-tests/test-client-api/__init__.py
MM   branches/stable/cartwheel-server/tests/functional-tests/test-with-user/test-pair/
A +  branches/stable/cartwheel-server/tests/functional-tests/test-with-user/test-pair/.svnignore
M    branches/stable/cartwheel-server/tests/functional-tests/test-with-user/test-pair/__init__.py
AM+  branches/stable/cartwheel-server/tests/test-dependencies/
M    branches/stable/cartwheel-server/website/canal/folder/handler.py
M    branches/stable/cartwheel-server/website/canal/group/analyses/EditBlast.py
M    branches/stable/cartwheel-server/website/canal/group/analyses/SeqcompAnalysis.py
M    branches/stable/cartwheel-server/website/canal/group/analyses/__init__.py
M    branches/stable/cartwheel-server/website/canal/group/analyses/baseEditHandler.py
M    branches/stable/cartwheel-server/website/canal/group/pair/__init__.py
M    branches/stable/cartwheel-server/website/canal/group/pair/pages.ptl