[bip] Indexing big sequence databases

C. Titus Brown ctb at msu.edu
Sun Mar 28 19:46:48 PDT 2010

Hi all,

with reference to this earlier thread in November about indexing FASTA
and FASTQ files,


I posted an update:


Basically, taking James Casbon's advice, we've switched to using sqlite as our
backend for the dirty work of storing sequences.

Comments & random thoughts welcome, as always.

C. Titus Brown, ctb at msu.edu

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