[bip] biopython - BMRB and/or Ref-DB

Peter biopython at maubp.freeserve.co.uk
Sun Jul 5 02:09:47 PDT 2009


On Sun, Jul 5, 2009 at 9:55 AM, amrita bhu2005<amritabhu2005 at yahoo.com> wrote:
>
>
> Dear all,
>
> I want to know that by using biopython programming is it possible
> to extract chemical shift information of amino acidsfrom BMRB or
> Ref-DB or not.
>
> Thanks,
> Amrita Kumari

Hi all,

Amrita has already asked about this on the Biopython mailing lists:
http://lists.open-bio.org/pipermail/biopython/2009-June/005331.html
http://lists.open-bio.org/pipermail/biopython-dev/2009-June/006293.html

We (Biopython) don't currently have any code to deal with BMRB
(BioMagresBank) or Ref-DB (referenced databank) - of course
suggestions and contributions are welcome.

http://www.bmrb.wisc.edu/ - BioMagResBank
http://redpoll.pharmacy.ualberta.ca/RefDB/ - Ref-DB

But perhaps someone here on the BiP mailing list has used these
databases with Python?

Peter



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