[bip] Bioinformatics Programming Language Shootout, Python performance poopoo'd

Andrew Dalke dalke at dalkescientific.com
Tue Feb 5 20:37:44 PST 2008


On Feb 6, 2008, at 4:48 AM, Andrew Dalke wrote:
> As a rough guess that's 4GB or larger.  Hmm, but I was reading from  
> a gzipped file.  Still, it'll have to be a *huge* file to get that  
> slow performance.


Here is it

   A 9.8 Gb file from a BLASTP search with Caenorhabditis elegans  
sequence



				Andrew
				dalke at dalkescientific.com





More information about the biology-in-python mailing list