[Avida-SVN] r3269 - development/documentation

[blwalker at myxo.css.msu.edu]

Author: blwalker
Date: 2009-05-29 11:13:02 -0400 (Fri, 29 May 2009)
New Revision: 3269

Modified:
   development/documentation/analyze.html
Log:

Documentation for the r_spec.n DETAIL option.


Modified: development/documentation/analyze.html
===================================================================
--- development/documentation/analyze.html	2009-05-29 15:01:17 UTC (rev 3268)
+++ development/documentation/analyze.html	2009-05-29 15:13:02 UTC (rev 3269)
@@ -644,11 +644,12 @@
 </tr>
 <tr>
 	<td><strong>total_task_performance_count</strong> (total # of tasks done)</td>
-  <td><strong>inst.n</strong> (# of times instruction number n is done)</td>
+  <td><strong>inst.n</strong> (# of times instruction #n is done)</td>
   <td><strong>r_tot.n</strong> (amount of resource n added to the organism's store in its lifetime)</td>
 </tr>
 <tr>
 	<td><strong>r_avail.n</strong> (amount of resource n in organism's store)</td>
+	<td><strong>r_spec.n</strong> (# of times specification #n is used)</td>
 </tr>
 </table>
 </div>
@@ -658,6 +659,11 @@
 </p>
 
 <p>
+<b>A note on r_spec.n</b>: This counts nop specifications done by any and all "collect-type" instructions -- that is, any instruction that uses the helper function DoCollect.  If more than one such instruction is included in the instruction set, r_spec.n will include specification counts for both instructions without any differentiation.
+For details on what the specification numbers mean, see cCodeLabel::AsIntUnique.
+</p>
+
+<p>
 If a FIND_LINEAGE was done before the RECALCULATE (or RECALC), the parent
 genotype for each regular genotype will be available, enabling the
 additional formats: