[Avida-SVN] r3343 - in branches/interrupt/tests/interruptModel_quorumSensing: . expected expected/data
beckma24 at myxo.css.msu.edu
beckma24 at myxo.css.msu.edu
Thu Jun 25 14:32:26 PDT 2009
Author: beckma24
Date: 2009-06-25 17:32:26 -0400 (Thu, 25 Jun 2009)
New Revision: 3343
Added:
branches/interrupt/tests/interruptModel_quorumSensing/expected/
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/average.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/count.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_average.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_compete.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_interrupt.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_repl.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_totalAvgEnergy.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/dominant.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/germline.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/instruction.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/instruction_histogram.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/message.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/stats.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/tasks.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/tasks_exe.dat
branches/interrupt/tests/interruptModel_quorumSensing/expected/data/time.dat
Log:
Readding expected results for test interruptModel_quorumSensing
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/average.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/average.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/average.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,22 @@
+# Avida Average Data
+# Thu Jun 25 17:34:46 2009
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 643387.096774 50.000000 0.709677 0.000000 50.000000 50.000000 50.000000 31.000000 1.000000 1.000000 0.000000 0.709677 0.218400 0.000000 0.000000
+100 1964.43 47.0526 1 0 49.7368 49.7368 47.0526 43.1818 0.877895 0.877895 0 8.97684 0.26661 -1 0
+200 62.9727 32.25 1 0 48.9 48.9 32.25 38.4615 1.032 1.032 0 14.08 -0.35689 -1 0
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/count.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/count.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/count.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,22 @@
+# Avida count data
+# Thu Jun 25 17:34:46 2009
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 1000 31 1 1 0 0 0 31 0 31 31 20 31 0 0
+100 23750 475 11 3 0 0 0 417 872 417 475 240 475 0 0
+200 25000 500 13 4 0 0 0 516 996 516 500 258 500 0 0
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_average.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_average.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_average.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,44 @@
+# Avida Average Deme Data
+# Thu Jun 25 17:34:46 2009
+# 1: Update
+# 2: Count
+# 3: Age
+# 4: Births
+# 5: Organisms
+# 6: Generation
+# 7: Births (at last replication)
+# 8: Organisms (at last replication)
+# 9: Merit
+# 10: Gestation Time
+# 11: Time Used (normalized by org fitness)
+# 12: Generations between current and last founders
+# 13: Events killed
+# 14: Attempts to kill event
+
+0 20 0.000000 0.550000 1.550000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+19 20 8 62.35 23.8 1.5 26.7075 10.17 1 3916.75 0.0315494 0 0 0
+20 19 9 83.4737 25 1.47368 28.3294 10.7279 1 4122.89 0.0332099 0 0 0
+39 19 8 78.6842 25 4.36842 33.5867 16.0477 1 2791.89 0.00975342 0 0 0
+40 19 9 99.8421 25 4.36842 33.7055 16.227 1 2791.89 0.00975342 0 0 0
+59 19 8 86.8421 25 7.05263 40.0412 17.8695 1 3343.74 0.0411709 0 0 0
+60 19 9 105.105 25 7.05263 40.3521 17.9205 1 3343.74 0.0411709 0 0 0
+79 20 8 61.8 22.6 9.25 38.6332 18.4766 1 1842.7 0.00555599 0 0 0
+80 18 9 86.5556 25 9.16667 38.5549 18.4894 1 2047.44 0.00617332 0 0 0
+99 19 8 77.5263 25 11.8947 40.6458 18.7817 1 4975.68 0.0224026 0 0 0
+100 19 9 98.2632 25 11.8947 41.0035 18.8288 1 4975.68 0.0224026 0 0 0
+119 19 8 106 25 15.2105 41.3269 19.254 1 2755.05 0.0224107 0 0 0
+120 19 9 128 25 15.2105 41.4785 19.2896 1 2755.05 0.0224107 0 0 0
+139 20 8 53.75 19 18.15 43.2633 19.6587 1 2140.9 inf 0 0 0
+140 15 9 85.9333 25 18.4 43.2464 19.6875 1 1521.07 0.00859068 0 0 0
+159 20 8 152.35 25 21.7 42.679 19.4594 1 2635.35 0.0181036 0 0 0
+160 20 9 180.05 25 21.7 42.7922 19.4553 1 2635.35 0.0181036 0 0 0
+179 20 8 130.55 25 24.8 43.8473 19.7913 1 2695.2 0.177075 0 0 0
+180 20 9 157.95 25 24.8 43.8949 19.807 1 2695.2 0.177075 0 0 0
+199 20 8 161.95 25 28.7 46.7144 20.2452 1 2997.9 0.283075 0 0 0
+200 20 9 186.65 25 28.7 46.8531 20.2691 1 2997.9 0.283075 0 0 0
+219 19 8 191.105 24.8421 31.3684 51.2432 20.4652 1 3211.26 inf 0 0 0
+220 19 9 221.474 22.6316 31.3684 51.5407 20.4737 1 3211.26 inf 0 0 0
+239 17 8 221.706 21.1176 33.2941 52.8856 20.3816 1 2570.94 0.324346 0 0 0
+240 14 9 237.786 23.2857 33.2143 52.9305 20.3837 1 3100.43 0.272518 0 0 0
+259 18 8 227.778 21.1667 36.3333 56.5992 20.1356 1 3627.61 1.07603 0 0 0
+260 15 9 249.667 25 36.2667 56.7365 20.1403 1 4353.13 1.29124 0 0 0
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_compete.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_compete.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_compete.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,19 @@
+# Avida compete demes data
+# Thu Jun 25 17:34:46 2009
+# 1: Update [update]
+# 2: Avg. deme fitness [avgfit]
+
+0 0.000000
+20 1.08893
+40 1.0479
+60 1.03972
+80 1.07555
+100 1.0466
+120 1.01603
+140 1.06549
+160 1.00203
+180 1.0048
+200 1.00157
+220 1.00045
+240 1.00016
+260 1.0001
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_interrupt.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_interrupt.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_interrupt.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,8 @@
+# Interrupt model stats averaged over all demes
+# Assumes each organism only contains a single thread!
+# Thu Jun 25 17:34:55 2009
+# 1: Update
+# 2: Organisms interrupted per deme
+
+99 0.000000
+199 0
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_repl.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_repl.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_repl.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,24 @@
+# Avida deme replication data
+# Thu Jun 25 17:34:46 2009
+# 1: Update [update]
+# 2: Number of deme replications [numrepl]
+# 3: Mean deme gestation time [gesttime]
+# 4: Mean number of births within replicated demes [numbirths]
+# 5: Mean heritable merit of replicated demes [merit]
+# 6: Mean generation of replicated demes [generation]
+# 7: Mean density of replicated demes [density]
+
+0 0 0.000000 0.000000 0.000000 0.000000 0.000000
+20 28 9 86.5714 1 0.821429 0.862857
+40 29 8.82759 75.2069 1 3.58621 0.831724
+60 30 8.83333 94.3667 1 6.13333 0.837333
+80 30 6.93333 53.6667 1 8.6 0.645333
+100 28 8.42857 78.4643 1 11.5714 0.791429
+120 27 9.51852 109 1 14.4074 0.927407
+140 32 8.5 56.5625 1 17.4062 0.63
+160 30 8.33333 117.967 1 21.0333 0.84
+180 31 9.03226 152.032 1 24.129 0.907097
+200 31 9.35484 174.387 1 27.8065 0.938065
+220 29 8.06897 173.966 1 30.7241 0.732414
+240 30 7.76667 145.867 1 33.2333 0.617333
+260 32 8.25 190.75 1 36.2188 0.5975
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_totalAvgEnergy.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_totalAvgEnergy.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/deme_totalAvgEnergy.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,19 @@
+# Average energy for demes in the population
+# Thu Jun 25 17:34:46 2009
+# 1: update
+# 2: Total Average Energy
+
+0 99509045.000000
+20 1e+08
+40 1e+08
+60 1e+08
+80 1e+08
+100 1e+08
+120 1e+08
+140 1e+08
+160 1e+08
+180 1e+08
+200 1e+08
+220 1e+08
+240 1e+08
+260 1e+08
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/dominant.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/dominant.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/dominant.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,22 @@
+# Avida Dominant Data
+# Thu Jun 25 17:34:46 2009
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 497500.000000 50.000000 1.000000 0.020000 50 50.000000 50.000000 31 11 11 0 0 1.000000 1 050-aaaaa
+100 29989.6 49 1 0.0204082 49 49 49 100 80 80 0 0 1 68 049-aaaah
+200 15345.2 22 1 0.0454545 47 47 22 125 135 135 0 0 1 180 047-aaaai
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/germline.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/germline.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/germline.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,19 @@
+# Avida germline data
+# Thu Jun 25 17:34:46 2009
+# 1: Update [update]
+# 2: Mean germline generation of replicated germlines [replgen]
+
+0 0.000000
+20 1.71429
+40 2.96552
+60 3.96667
+80 4.4
+100 5.89286
+120 7.7037
+140 9.34375
+160 10.8333
+180 12.4194
+200 14.1613
+220 15.6207
+240 16.8
+260 18.4688
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/instruction.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/instruction.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/instruction.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,17 @@
+# Avida instruction execution data
+# Thu Jun 25 17:34:46 2009
+# 1: Update
+# 2: nop-A
+# 3: nop-B
+# 4: nop-C
+# 5: nop-X
+# 6: repro
+# 7: send-msg
+# 8: msg-handler
+# 9: end-handler
+# 10: rotate-left-one
+# 11: rotate-right-one
+
+0 0 0 0 1078 22 0 0 0 0 0
+100 25 75 0 21425 475 25 50 100 125 50
+200 75 50 175 14525 500 75 50 200 275 200
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/instruction_histogram.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/instruction_histogram.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/instruction_histogram.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,15 @@
+# 1: Update
+# 2: nop-A
+# 3: nop-B
+# 4: nop-C
+# 5: nop-X
+# 6: repro
+# 7: send-msg
+# 8: msg-handler
+# 9: end-handler
+# 10: rotate-left-one
+# 11: rotate-right-one
+
+0 0 0 0 1519 31 0 0 0 0 0
+100 2 6 2 926 26 5 4 8 6 3
+200 3 16 8 855 48 7 1 10 13 17
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/message.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/message.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/message.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,10 @@
+# Number of organsism to organisms messages
+
+# 1: update
+# 2: Totlal messages sent
+# 3: Sent successfully
+# 4: Dropped
+# 5: Failed
+
+99 106 89 0 17
+199 672 623 0 49
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/stats.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/stats.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/stats.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,18 @@
+# Generic Statistics Data
+# Thu Jun 25 17:34:46 2009
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.342945 0.000000 0.000000 -0.000000 -0.000000 1 0.000000 0.000000 0 0 0
+100 0 0 0 -0 -0 0 2.21481 0 0 0 0
+200 0 0 0 -0 -0 0 2.35927 0 0 0 0
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/tasks.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/tasks.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/tasks.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,9 @@
+# Avida tasks data
+# Thu Jun 25 17:34:46 2009
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+
+0
+100
+200
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/tasks_exe.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/tasks_exe.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/tasks_exe.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,9 @@
+# Avida tasks execution data
+# Thu Jun 25 17:34:46 2009
+# First column gives the current update, all further columns give the number
+# of times the particular task has been executed this update.
+# 1: Update
+
+0
+100
+200
Added: branches/interrupt/tests/interruptModel_quorumSensing/expected/data/time.dat
===================================================================
--- branches/interrupt/tests/interruptModel_quorumSensing/expected/data/time.dat (rev 0)
+++ branches/interrupt/tests/interruptModel_quorumSensing/expected/data/time.dat 2009-06-25 21:32:26 UTC (rev 3343)
@@ -0,0 +1,10 @@
+# Avida time data
+# Thu Jun 25 17:34:46 2009
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.709677 1000
+100 0.0100766 8.97684 23750
+200 0.093018 14.08 25000
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