[Avida-SVN] r3370 - branches/goings/source/main

[goingssh at myxo.css.msu.edu]

Author: goingssh
Date: 2009-08-19 20:03:29 -0400 (Wed, 19 Aug 2009)
New Revision: 3370

Modified:
   branches/goings/source/main/cPopulation.cc
Log:
changed to use edit distance instead of hamming distance in fitness sharing


Modified: branches/goings/source/main/cPopulation.cc
===================================================================
--- branches/goings/source/main/cPopulation.cc	2009-08-18 18:52:30 UTC (rev 3369)
+++ branches/goings/source/main/cPopulation.cc	2009-08-20 00:03:29 UTC (rev 3370)
@@ -937,7 +937,7 @@
 	{
 		int dist = m_world->GetConfig().NICHE_RADIUS.Get();
 		if (cell_array[i].GetOrganism())
-			dist = cGenomeUtil::FindHammingDistance(cell_array[i].GetOrganism()->GetGenome(), gen->GetGenome(), 0);
+		  dist = cGenomeUtil::FindEditDistance(cell_array[i].GetOrganism()->GetGenome(), gen->GetGenome());
 		hdists[i][cell_id] = dist;
 		hdists[cell_id][i] = dist;
 	}