[Avida-SVN] r3202 - in development/tests: avida_GA_sex avida_GA_sex/expected avida_GA_sex/expected/data avida_GA_sex/expected/data/archive green_beard_instructions green_beard_instructions/expected green_beard_instructions/expected/data green_beard_instructions/expected/data/archive sex sex/expected sex/expected/data sex-asex sex-asex/expected sex-asex/expected/data sex-modular sex-modular/expected sex-modular/expected/data
brysonda at myxo.css.msu.edu
brysonda at myxo.css.msu.edu
Wed Apr 1 19:17:09 PDT 2009
Author: brysonda
Date: 2009-04-01 22:17:09 -0400 (Wed, 01 Apr 2009)
New Revision: 3202
Added:
development/tests/avida_GA_sex/expected/
development/tests/avida_GA_sex/expected/data/
development/tests/avida_GA_sex/expected/data/archive/
development/tests/avida_GA_sex/expected/data/archive/041-aaaab.org
development/tests/avida_GA_sex/expected/data/archive/041-aaabj.org
development/tests/avida_GA_sex/expected/data/average.dat
development/tests/avida_GA_sex/expected/data/count.dat
development/tests/avida_GA_sex/expected/data/detail-100.pop
development/tests/avida_GA_sex/expected/data/dominant.dat
development/tests/avida_GA_sex/expected/data/resource.dat
development/tests/avida_GA_sex/expected/data/stats.dat
development/tests/avida_GA_sex/expected/data/tasks.dat
development/tests/avida_GA_sex/expected/data/tasks_quality.dat
development/tests/avida_GA_sex/expected/data/time.dat
development/tests/green_beard_instructions/expected/
development/tests/green_beard_instructions/expected/data/
development/tests/green_beard_instructions/expected/data/archive/
development/tests/green_beard_instructions/expected/data/archive/099-aaaad.org
development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org
development/tests/green_beard_instructions/expected/data/average.dat
development/tests/green_beard_instructions/expected/data/count.dat
development/tests/green_beard_instructions/expected/data/dominant.dat
development/tests/green_beard_instructions/expected/data/donations.dat
development/tests/green_beard_instructions/expected/data/instruction.dat
development/tests/green_beard_instructions/expected/data/resource.dat
development/tests/green_beard_instructions/expected/data/stats.dat
development/tests/green_beard_instructions/expected/data/tasks.dat
development/tests/green_beard_instructions/expected/data/time.dat
development/tests/sex-asex/expected/
development/tests/sex-asex/expected/data/
development/tests/sex-asex/expected/data/average.dat
development/tests/sex-asex/expected/data/count.dat
development/tests/sex-asex/expected/data/dominant.dat
development/tests/sex-asex/expected/data/resource.dat
development/tests/sex-asex/expected/data/stats.dat
development/tests/sex-asex/expected/data/tasks.dat
development/tests/sex-asex/expected/data/time.dat
development/tests/sex-modular/expected/
development/tests/sex-modular/expected/data/
development/tests/sex-modular/expected/data/average.dat
development/tests/sex-modular/expected/data/count.dat
development/tests/sex-modular/expected/data/dominant.dat
development/tests/sex-modular/expected/data/resource.dat
development/tests/sex-modular/expected/data/stats.dat
development/tests/sex-modular/expected/data/tasks.dat
development/tests/sex-modular/expected/data/time.dat
development/tests/sex/expected/
development/tests/sex/expected/data/
development/tests/sex/expected/data/average.dat
development/tests/sex/expected/data/count.dat
development/tests/sex/expected/data/dominant.dat
development/tests/sex/expected/data/resource.dat
development/tests/sex/expected/data/stats.dat
development/tests/sex/expected/data/tasks.dat
development/tests/sex/expected/data/time.dat
Log:
Update expected results
Added: development/tests/avida_GA_sex/expected/data/archive/041-aaaab.org
===================================================================
--- development/tests/avida_GA_sex/expected/data/archive/041-aaaab.org (rev 0)
+++ development/tests/avida_GA_sex/expected/data/archive/041-aaaab.org 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,288 @@
+# Wed Apr 1 22:17:36 2009
+# Filename........: archive/041-aaaab.org
+# Update Output...: 0
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: -1
+# Genotype ID.....: 2
+# Parent Gen ID...: -1
+# Tree Depth......: 0
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 41
+# Fitness.........: 2.439024
+# Errors..........: 0
+# Genome Size.....: 41
+# Copied Size.....: 41
+# Executed Size...: 41
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.448650)
+# optimize 1 (0.901128)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (1.000000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (1.000000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+
+
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+repro-sex
Added: development/tests/avida_GA_sex/expected/data/archive/041-aaabj.org
===================================================================
--- development/tests/avida_GA_sex/expected/data/archive/041-aaabj.org (rev 0)
+++ development/tests/avida_GA_sex/expected/data/archive/041-aaabj.org 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,288 @@
+# Wed Apr 1 22:17:44 2009
+# Filename........: archive/041-aaabj.org
+# Update Output...: 100
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 86
+# Genotype ID.....: 315
+# Parent Gen ID...: 297
+# Tree Depth......: 10
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 41
+# Fitness.........: 2.439024
+# Errors..........: 0
+# Genome Size.....: 41
+# Copied Size.....: 41
+# Executed Size...: 41
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.801139)
+# optimize 1 (0.835695)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (1.000000)
+# optimize 1 (0.001000)
+# optimize 1 (1.000000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (1.000000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+# optimize 1 (0.001000)
+
+
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+repro-sex
Added: development/tests/avida_GA_sex/expected/data/average.dat
===================================================================
--- development/tests/avida_GA_sex/expected/data/average.dat (rev 0)
+++ development/tests/avida_GA_sex/expected/data/average.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida Average Data
+# Wed Apr 1 22:17:36 2009
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 100.000000 41.000000 0.000000 0.000000 41.000000 41.000000 41.000000 1.000000 1.005000 1.005000 0.000000 0.000000 0.000000 0.000000 0.000000
+100 7.05051e+29 41 1.82931e+28 0 41 41 41 4.87805 0.12 0.12 7.05 118.185 -12.5136 0 0
Added: development/tests/avida_GA_sex/expected/data/count.dat
===================================================================
--- development/tests/avida_GA_sex/expected/data/count.dat (rev 0)
+++ development/tests/avida_GA_sex/expected/data/count.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida count data
+# Wed Apr 1 22:17:36 2009
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 2000 200 200 1 0 0 0 201 1 201 200 200 200 0 0
+100 2000 200 41 27 0 0 0 24 24 24 195 76 200 0 0
Added: development/tests/avida_GA_sex/expected/data/detail-100.pop
===================================================================
--- development/tests/avida_GA_sex/expected/data/detail-100.pop (rev 0)
+++ development/tests/avida_GA_sex/expected/data/detail-100.pop 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,58 @@
+#filetype genotype_data
+#format id parent_id parent_dist num_cpus total_cpus length merit gest_time fitness update_born update_dead depth sequence
+
+# 1: ID
+# 2: parent ID
+# 3: parent distance
+# 4: number of organisms currently alive
+# 5: total number of organisms that ever existed
+# 6: length of genome
+# 7: merit
+# 8: gestation time
+# 9: fitness
+# 10: update born
+# 11: update deactivated
+# 12: depth in phylogentic tree
+# 13: genome of organism
+
+315 297 -1 33 105 41 1.17178e+34 41 2.85799e+32 86 -1 10 babaabaabbbaaaaaabaaabaababaababaaaabaabc
+248 244 -1 32 287 41 1.76744e+30 41 4.31084e+28 46 -1 8 babaabaabbbaabababbbabaababaababaaaabaabc
+208 2 -1 28 214 41 4.54419e+27 41 1.10834e+26 8 -1 1 bababbaabbaaabbbabbaabaababaababaaaabbabc
+297 246 -1 17 149 41 1.05883e+31 41 2.58251e+29 71 -1 9 babaabaabbbaaaaaabbaabaababaababaaaabaabc
+305 297 -1 15 54 41 2.10964e+30 41 5.14546e+28 78 -1 10 babaabaabbbaaaaaabbaabaababaababaaabbaabc
+283 257 -1 9 100 41 1.94898e+28 41 4.75361e+26 62 -1 6 babaabaabbaabaababbaabaababaababaaaabaabc
+326 322 -1 8 23 41 7.2684e+30 41 1.77278e+29 97 -1 12 babaabbabbbabaaaabaaabaababaababaaaabaabc
+277 257 -1 8 36 41 1.22236e+28 41 2.98137e+26 60 -1 6 babaabaabbaaabababbaabaababaababaaaabaabc
+252 248 -1 5 31 41 3.9443e+28 41 9.62025e+26 48 -1 9 babaabaabbbaabababbbabaabbbaababaaaabaabc
+229 221 -1 4 104 41 1.29215e+29 41 3.15158e+27 31 -1 5 babaabaabbaaaaababbbabaababaababaaaabbabc
+266 248 -1 3 27 41 4.89704e+28 41 1.1944e+27 56 -1 9 babaabaabbaaaaababbbabaababaababaaaabaabc
+329 248 -1 3 3 41 2.42343e+30 41 5.91081e+28 99 -1 9 babaabaabbbaabababbbabaababaababaaabbaabc
+219 208 -1 3 9 41 3.36395e+27 41 8.20475e+25 25 -1 2 bababbaaabaaabbbabbaabaababaababaaaabbabc
+213 212 -1 2 190 41 5.62237e+27 41 1.37131e+26 12 -1 3 babaabaabbaaabababbaabaababaababaaaabbabc
+244 238 -1 2 49 41 3.24316e+29 41 7.91015e+27 45 -1 7 babaabaabbbaaaababbbabaababaababaaaabaabc
+301 208 -1 2 2 41 1.94845e+27 41 4.75233e+25 73 -1 2 bababbaabbaaabbbabbaabbababaababaaaabbabc
+331 326 -1 2 2 41 3.32932e+30 41 8.12029e+28 99 -1 13 babaaababbbabaaaabaaabaababaababaaaabaabc
+316 248 -1 1 5 41 1.12292e+29 41 2.73884e+27 86 -1 9 babaabaabbbaabababbbabaababaababaaaababbc
+13 -1 -1 1 1 41 0 0 0 -1 -1 0 babababaaabbbbaabbbbaabbbbbabaabbbbabbaac
+34 -1 -1 1 1 41 0 0 0 -1 -1 0 babaabaabaaaabbbbabaabbbbababbbbbaaabbbac
+53 -1 -1 1 1 41 0 0 0 -1 -1 0 aababbbbbbaaabbbbbbbabaabaabbbbaabaaaaabc
+56 -1 -1 1 1 41 0 0 0 -1 -1 0 abaababaaabbaaababbabaabbaabaaabababaabac
+75 -1 -1 1 1 41 0 0 0 -1 -1 0 babababababaabbbababbaaabaabaababbbbbbaac
+76 -1 -1 1 1 41 0 0 0 -1 -1 0 bbaaabbabaaabbaaaabbaabbbbabbbbaababbaaac
+133 -1 -1 1 1 41 0 0 0 -1 -1 0 bababbbaabbbaababaabaabaababbababaabbabbc
+150 -1 -1 1 1 41 0 0 0 -1 -1 0 bababbaaabbbbbaaabbaaabbabababaabbabbaabc
+151 -1 -1 1 1 41 0 0 0 -1 -1 0 bababbbababbbaabbaabbbaaababababbabbbabac
+153 -1 -1 1 1 41 0 0 0 -1 -1 0 aabbabaabbaabbbbbbbababaababaaaabaababaac
+259 248 -1 1 10 41 4.47658e+27 41 1.09185e+26 52 -1 9 babaabaabbaaabababbbabaababaababaaaabaabc
+292 285 -1 1 1 41 1.24974e+28 41 3.04816e+26 69 -1 8 babaabaabbaabaababbbabaabbbaababaaaabaabc
+285 279 -1 1 6 41 1.00236e+28 41 2.44478e+26 63 -1 7 babaabaabbbaaaababbbabaabbbaababaaaabaabc
+303 283 -1 1 1 41 1.80406e+27 41 4.40014e+25 76 -1 7 babaabaabbaabbababbaabaababaababaaaabaabc
+304 248 -1 1 1 41 1.44115e+30 41 3.515e+28 77 -1 9 babaabaabbbaabababbaabaababaababaaaabaabc
+221 213 -1 1 110 41 1.84587e+28 41 4.50213e+26 26 -1 4 babaabaabbaaaaababbaabaababaababaaaabbabc
+299 248 -1 1 5 41 8.48872e+27 41 2.07042e+26 72 -1 9 babaabaabbaabaababbbabaababaababaaaabaabc
+314 298 -1 1 3 41 1.65268e+29 41 4.03093e+27 85 -1 7 bbbaabaabbbaaaababbaabaabbbaababaaaabaabc
+313 297 -1 1 2 41 2.03776e+28 41 4.97013e+26 85 -1 10 babaabaabbbaaaaaabbaabaababaaaabaaaabaabc
+321 315 -1 1 2 41 1.96927e+29 41 4.80311e+27 95 -1 11 babbabaabbbaaaaaabaaabaababaababaaaabaabc
+318 314 -1 1 2 41 2.10615e+29 41 5.13696e+27 91 -1 8 babaabaabbbaaaababbaabaabbbaababaaaabaabc
+330 248 -1 1 1 41 1.66154e+30 41 4.05254e+28 99 -1 9 babaabaabbbaabababbbabaababaababaaaabaabb
+332 326 -1 1 1 41 7.74035e+30 41 1.88789e+29 100 -1 13 babaabbabbbabaaaabaaabaababaababaaabbaabc
Added: development/tests/avida_GA_sex/expected/data/dominant.dat
===================================================================
--- development/tests/avida_GA_sex/expected/data/dominant.dat (rev 0)
+++ development/tests/avida_GA_sex/expected/data/dominant.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida Dominant Data
+# Wed Apr 1 22:17:36 2009
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 41 0.000000 0.000000 1 0 0 0 0 0.000000 2 041-aaaab
+100 1.17178e+34 41 2.85799e+32 0.0243902 41 41 41 33 5 5 10 1 1.46182e+29 315 041-aaabj
Added: development/tests/avida_GA_sex/expected/data/resource.dat
===================================================================
--- development/tests/avida_GA_sex/expected/data/resource.dat (rev 0)
+++ development/tests/avida_GA_sex/expected/data/resource.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,230 @@
+# Avida resource data
+# Wed Apr 1 22:17:36 2009
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+# 2: resOPT1
+# 3: resOPT2
+# 4: resOPT1THRESH0
+# 5: resOPT1THRESH1
+# 6: resOPT1THRESH2
+# 7: resOPT1THRESH3
+# 8: resOPT1THRESH4
+# 9: resOPT1THRESH5
+# 10: resOPT1THRESH6
+# 11: resOPT1THRESH7
+# 12: resOPT1THRESH8
+# 13: resOPT1THRESH9
+# 14: resOPT1RANGE0
+# 15: resOPT1RANGE1
+# 16: resOPT1RANGE2
+# 17: resOPT1RANGE3
+# 18: resOPT1RANGE4
+# 19: resOPT1RANGE5
+# 20: resOPT1RANGE6
+# 21: resOPT1RANGE7
+# 22: resOPT1RANGE8
+# 23: resOPT1RANGE9
+# 24: resOPT2THRESH0
+# 25: resOPT2THRESH1
+# 26: resOPT2THRESH2
+# 27: resOPT2THRESH3
+# 28: resOPT2THRESH4
+# 29: resOPT2THRESH5
+# 30: resOPT2THRESH6
+# 31: resOPT2THRESH7
+# 32: resOPT2THRESH8
+# 33: resOPT2THRESH9
+# 34: resOPT2THRESH10
+# 35: resOPT2THRESH11
+# 36: resOPT2THRESH12
+# 37: resOPT2THRESH13
+# 38: resOPT2THRESH14
+# 39: resOPT2THRESH15
+# 40: resOPT2THRESH16
+# 41: resOPT2THRESH17
+# 42: resOPT2THRESH18
+# 43: resOPT2THRESH19
+# 44: resOPT2THRESH20
+# 45: resOPT2THRESH21
+# 46: resOPT2THRESH22
+# 47: resOPT2THRESH23
+# 48: resOPT2THRESH24
+# 49: resOPT2THRESH25
+# 50: resOPT2THRESH26
+# 51: resOPT2THRESH27
+# 52: resOPT2THRESH28
+# 53: resOPT2THRESH29
+# 54: resOPT2THRESH30
+# 55: resOPT2THRESH31
+# 56: resOPT2THRESH32
+# 57: resOPT2THRESH33
+# 58: resOPT2THRESH34
+# 59: resOPT2THRESH35
+# 60: resOPT2THRESH36
+# 61: resOPT2THRESH37
+# 62: resOPT2THRESH38
+# 63: resOPT2THRESH39
+# 64: resOPT2THRESH40
+# 65: resOPT2THRESH41
+# 66: resOPT2THRESH42
+# 67: resOPT2THRESH43
+# 68: resOPT2THRESH44
+# 69: resOPT2THRESH45
+# 70: resOPT2THRESH46
+# 71: resOPT2THRESH47
+# 72: resOPT2THRESH48
+# 73: resOPT2THRESH49
+# 74: resOPT2THRESH50
+# 75: resOPT2THRESH51
+# 76: resOPT2THRESH52
+# 77: resOPT2THRESH53
+# 78: resOPT2THRESH54
+# 79: resOPT2THRESH55
+# 80: resOPT2THRESH56
+# 81: resOPT2THRESH57
+# 82: resOPT2THRESH58
+# 83: resOPT2THRESH59
+# 84: resOPT2THRESH60
+# 85: resOPT2THRESH61
+# 86: resOPT2THRESH62
+# 87: resOPT2THRESH63
+# 88: resOPT2THRESH64
+# 89: resOPT2THRESH65
+# 90: resOPT2THRESH66
+# 91: resOPT2THRESH67
+# 92: resOPT2THRESH68
+# 93: resOPT2THRESH69
+# 94: resOPT2THRESH70
+# 95: resOPT2THRESH71
+# 96: resOPT2THRESH72
+# 97: resOPT2THRESH73
+# 98: resOPT2THRESH74
+# 99: resOPT2THRESH75
+# 100: resOPT2THRESH76
+# 101: resOPT2THRESH77
+# 102: resOPT2THRESH78
+# 103: resOPT2THRESH79
+# 104: resOPT2THRESH80
+# 105: resOPT2THRESH81
+# 106: resOPT2THRESH82
+# 107: resOPT2THRESH83
+# 108: resOPT2THRESH84
+# 109: resOPT2THRESH85
+# 110: resOPT2THRESH86
+# 111: resOPT2THRESH87
+# 112: resOPT2THRESH88
+# 113: resOPT2THRESH89
+# 114: resOPT2THRESH90
+# 115: resOPT2THRESH91
+# 116: resOPT2THRESH92
+# 117: resOPT2THRESH93
+# 118: resOPT2THRESH94
+# 119: resOPT2THRESH95
+# 120: resOPT2THRESH96
+# 121: resOPT2THRESH97
+# 122: resOPT2THRESH98
+# 123: resOPT2THRESH99
+# 124: resOPT2RANGE0
+# 125: resOPT2RANGE1
+# 126: resOPT2RANGE2
+# 127: resOPT2RANGE3
+# 128: resOPT2RANGE4
+# 129: resOPT2RANGE5
+# 130: resOPT2RANGE6
+# 131: resOPT2RANGE7
+# 132: resOPT2RANGE8
+# 133: resOPT2RANGE9
+# 134: resOPT2RANGE10
+# 135: resOPT2RANGE11
+# 136: resOPT2RANGE12
+# 137: resOPT2RANGE13
+# 138: resOPT2RANGE14
+# 139: resOPT2RANGE15
+# 140: resOPT2RANGE16
+# 141: resOPT2RANGE17
+# 142: resOPT2RANGE18
+# 143: resOPT2RANGE19
+# 144: resOPT2RANGE20
+# 145: resOPT2RANGE21
+# 146: resOPT2RANGE22
+# 147: resOPT2RANGE23
+# 148: resOPT2RANGE24
+# 149: resOPT2RANGE25
+# 150: resOPT2RANGE26
+# 151: resOPT2RANGE27
+# 152: resOPT2RANGE28
+# 153: resOPT2RANGE29
+# 154: resOPT2RANGE30
+# 155: resOPT2RANGE31
+# 156: resOPT2RANGE32
+# 157: resOPT2RANGE33
+# 158: resOPT2RANGE34
+# 159: resOPT2RANGE35
+# 160: resOPT2RANGE36
+# 161: resOPT2RANGE37
+# 162: resOPT2RANGE38
+# 163: resOPT2RANGE39
+# 164: resOPT2RANGE40
+# 165: resOPT2RANGE41
+# 166: resOPT2RANGE42
+# 167: resOPT2RANGE43
+# 168: resOPT2RANGE44
+# 169: resOPT2RANGE45
+# 170: resOPT2RANGE46
+# 171: resOPT2RANGE47
+# 172: resOPT2RANGE48
+# 173: resOPT2RANGE49
+# 174: resOPT2RANGE50
+# 175: resOPT2RANGE51
+# 176: resOPT2RANGE52
+# 177: resOPT2RANGE53
+# 178: resOPT2RANGE54
+# 179: resOPT2RANGE55
+# 180: resOPT2RANGE56
+# 181: resOPT2RANGE57
+# 182: resOPT2RANGE58
+# 183: resOPT2RANGE59
+# 184: resOPT2RANGE60
+# 185: resOPT2RANGE61
+# 186: resOPT2RANGE62
+# 187: resOPT2RANGE63
+# 188: resOPT2RANGE64
+# 189: resOPT2RANGE65
+# 190: resOPT2RANGE66
+# 191: resOPT2RANGE67
+# 192: resOPT2RANGE68
+# 193: resOPT2RANGE69
+# 194: resOPT2RANGE70
+# 195: resOPT2RANGE71
+# 196: resOPT2RANGE72
+# 197: resOPT2RANGE73
+# 198: resOPT2RANGE74
+# 199: resOPT2RANGE75
+# 200: resOPT2RANGE76
+# 201: resOPT2RANGE77
+# 202: resOPT2RANGE78
+# 203: resOPT2RANGE79
+# 204: resOPT2RANGE80
+# 205: resOPT2RANGE81
+# 206: resOPT2RANGE82
+# 207: resOPT2RANGE83
+# 208: resOPT2RANGE84
+# 209: resOPT2RANGE85
+# 210: resOPT2RANGE86
+# 211: resOPT2RANGE87
+# 212: resOPT2RANGE88
+# 213: resOPT2RANGE89
+# 214: resOPT2RANGE90
+# 215: resOPT2RANGE91
+# 216: resOPT2RANGE92
+# 217: resOPT2RANGE93
+# 218: resOPT2RANGE94
+# 219: resOPT2RANGE95
+# 220: resOPT2RANGE96
+# 221: resOPT2RANGE97
+# 222: resOPT2RANGE98
+# 223: resOPT2RANGE99
+
+0 99.489312 99.489312 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.9!
48931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4.974466 4!
.974466 4.974466 4.974466
+100 813.057 532.057 634.434 634.434 265.47 198.489 82.7762 70.3753 70.0101 69.7722 47.525 47.525 317.217 132.735 233.257 98.3206 133.094 231.66 192.263 75.6335 317.217 317.217 634.434 634.434 634.434 634.434 634.434 158.478 142.97 139.372 125.453 120.198 92.8349 92.8078 87.5718 87.5718 87.5718 70.4911 69.1393 48.4933 48.4933 47.6205 47.6205 47.6205 47.6205 47.6205 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 47.525 317.217 317.217 317.217 317.217 79.2392 217.208 254.238 158.846 169.978 106.648 243.406 2!
14.342 317.032 317.217 244.102 305.853 137.787 317.217 302.9 317.217 317.217 317.217 317.217 315.739 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217 317.217
Added: development/tests/avida_GA_sex/expected/data/stats.dat
===================================================================
--- development/tests/avida_GA_sex/expected/data/stats.dat (rev 0)
+++ development/tests/avida_GA_sex/expected/data/stats.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,17 @@
+# Generic Statistics Data
+# Wed Apr 1 22:17:36 2009
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.074061 0.074061 0.076947 0.076947 200 5.298317 0.000000 0 0 0
+100 9.65652 0.0740612 0.0740612 0.0769472 0.0769472 0 2.84608 0 1 0 0
Added: development/tests/avida_GA_sex/expected/data/tasks.dat
===================================================================
--- development/tests/avida_GA_sex/expected/data/tasks.dat (rev 0)
+++ development/tests/avida_GA_sex/expected/data/tasks.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,230 @@
+# Avida tasks data
+# Wed Apr 1 22:17:36 2009
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Optimize
+# 3: Optimize
+# 4: Optimize
+# 5: Optimize
+# 6: Optimize
+# 7: Optimize
+# 8: Optimize
+# 9: Optimize
+# 10: Optimize
+# 11: Optimize
+# 12: Optimize
+# 13: Optimize
+# 14: Optimize
+# 15: Optimize
+# 16: Optimize
+# 17: Optimize
+# 18: Optimize
+# 19: Optimize
+# 20: Optimize
+# 21: Optimize
+# 22: Optimize
+# 23: Optimize
+# 24: Optimize
+# 25: Optimize
+# 26: Optimize
+# 27: Optimize
+# 28: Optimize
+# 29: Optimize
+# 30: Optimize
+# 31: Optimize
+# 32: Optimize
+# 33: Optimize
+# 34: Optimize
+# 35: Optimize
+# 36: Optimize
+# 37: Optimize
+# 38: Optimize
+# 39: Optimize
+# 40: Optimize
+# 41: Optimize
+# 42: Optimize
+# 43: Optimize
+# 44: Optimize
+# 45: Optimize
+# 46: Optimize
+# 47: Optimize
+# 48: Optimize
+# 49: Optimize
+# 50: Optimize
+# 51: Optimize
+# 52: Optimize
+# 53: Optimize
+# 54: Optimize
+# 55: Optimize
+# 56: Optimize
+# 57: Optimize
+# 58: Optimize
+# 59: Optimize
+# 60: Optimize
+# 61: Optimize
+# 62: Optimize
+# 63: Optimize
+# 64: Optimize
+# 65: Optimize
+# 66: Optimize
+# 67: Optimize
+# 68: Optimize
+# 69: Optimize
+# 70: Optimize
+# 71: Optimize
+# 72: Optimize
+# 73: Optimize
+# 74: Optimize
+# 75: Optimize
+# 76: Optimize
+# 77: Optimize
+# 78: Optimize
+# 79: Optimize
+# 80: Optimize
+# 81: Optimize
+# 82: Optimize
+# 83: Optimize
+# 84: Optimize
+# 85: Optimize
+# 86: Optimize
+# 87: Optimize
+# 88: Optimize
+# 89: Optimize
+# 90: Optimize
+# 91: Optimize
+# 92: Optimize
+# 93: Optimize
+# 94: Optimize
+# 95: Optimize
+# 96: Optimize
+# 97: Optimize
+# 98: Optimize
+# 99: Optimize
+# 100: Optimize
+# 101: Optimize
+# 102: Optimize
+# 103: Optimize
+# 104: Optimize
+# 105: Optimize
+# 106: Optimize
+# 107: Optimize
+# 108: Optimize
+# 109: Optimize
+# 110: Optimize
+# 111: Optimize
+# 112: Optimize
+# 113: Optimize
+# 114: Optimize
+# 115: Optimize
+# 116: Optimize
+# 117: Optimize
+# 118: Optimize
+# 119: Optimize
+# 120: Optimize
+# 121: Optimize
+# 122: Optimize
+# 123: Optimize
+# 124: Optimize
+# 125: Optimize
+# 126: Optimize
+# 127: Optimize
+# 128: Optimize
+# 129: Optimize
+# 130: Optimize
+# 131: Optimize
+# 132: Optimize
+# 133: Optimize
+# 134: Optimize
+# 135: Optimize
+# 136: Optimize
+# 137: Optimize
+# 138: Optimize
+# 139: Optimize
+# 140: Optimize
+# 141: Optimize
+# 142: Optimize
+# 143: Optimize
+# 144: Optimize
+# 145: Optimize
+# 146: Optimize
+# 147: Optimize
+# 148: Optimize
+# 149: Optimize
+# 150: Optimize
+# 151: Optimize
+# 152: Optimize
+# 153: Optimize
+# 154: Optimize
+# 155: Optimize
+# 156: Optimize
+# 157: Optimize
+# 158: Optimize
+# 159: Optimize
+# 160: Optimize
+# 161: Optimize
+# 162: Optimize
+# 163: Optimize
+# 164: Optimize
+# 165: Optimize
+# 166: Optimize
+# 167: Optimize
+# 168: Optimize
+# 169: Optimize
+# 170: Optimize
+# 171: Optimize
+# 172: Optimize
+# 173: Optimize
+# 174: Optimize
+# 175: Optimize
+# 176: Optimize
+# 177: Optimize
+# 178: Optimize
+# 179: Optimize
+# 180: Optimize
+# 181: Optimize
+# 182: Optimize
+# 183: Optimize
+# 184: Optimize
+# 185: Optimize
+# 186: Optimize
+# 187: Optimize
+# 188: Optimize
+# 189: Optimize
+# 190: Optimize
+# 191: Optimize
+# 192: Optimize
+# 193: Optimize
+# 194: Optimize
+# 195: Optimize
+# 196: Optimize
+# 197: Optimize
+# 198: Optimize
+# 199: Optimize
+# 200: Optimize
+# 201: Optimize
+# 202: Optimize
+# 203: Optimize
+# 204: Optimize
+# 205: Optimize
+# 206: Optimize
+# 207: Optimize
+# 208: Optimize
+# 209: Optimize
+# 210: Optimize
+# 211: Optimize
+# 212: Optimize
+# 213: Optimize
+# 214: Optimize
+# 215: Optimize
+# 216: Optimize
+# 217: Optimize
+# 218: Optimize
+# 219: Optimize
+# 220: Optimize
+# 221: Optimize
+# 222: Optimize
+# 223: Optimize
+
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+100 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190 190
Added: development/tests/avida_GA_sex/expected/data/tasks_quality.dat
===================================================================
--- development/tests/avida_GA_sex/expected/data/tasks_quality.dat (rev 0)
+++ development/tests/avida_GA_sex/expected/data/tasks_quality.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,451 @@
+# Avida tasks quality data
+# Wed Apr 1 22:17:36 2009
+# First column gives the current update, rest give average and max task quality
+# 1: Update
+# 2: Optimize Average
+# 3: Optimize Max
+# 4: Optimize Average
+# 5: Optimize Max
+# 6: Optimize Average
+# 7: Optimize Max
+# 8: Optimize Average
+# 9: Optimize Max
+# 10: Optimize Average
+# 11: Optimize Max
+# 12: Optimize Average
+# 13: Optimize Max
+# 14: Optimize Average
+# 15: Optimize Max
+# 16: Optimize Average
+# 17: Optimize Max
+# 18: Optimize Average
+# 19: Optimize Max
+# 20: Optimize Average
+# 21: Optimize Max
+# 22: Optimize Average
+# 23: Optimize Max
+# 24: Optimize Average
+# 25: Optimize Max
+# 26: Optimize Average
+# 27: Optimize Max
+# 28: Optimize Average
+# 29: Optimize Max
+# 30: Optimize Average
+# 31: Optimize Max
+# 32: Optimize Average
+# 33: Optimize Max
+# 34: Optimize Average
+# 35: Optimize Max
+# 36: Optimize Average
+# 37: Optimize Max
+# 38: Optimize Average
+# 39: Optimize Max
+# 40: Optimize Average
+# 41: Optimize Max
+# 42: Optimize Average
+# 43: Optimize Max
+# 44: Optimize Average
+# 45: Optimize Max
+# 46: Optimize Average
+# 47: Optimize Max
+# 48: Optimize Average
+# 49: Optimize Max
+# 50: Optimize Average
+# 51: Optimize Max
+# 52: Optimize Average
+# 53: Optimize Max
+# 54: Optimize Average
+# 55: Optimize Max
+# 56: Optimize Average
+# 57: Optimize Max
+# 58: Optimize Average
+# 59: Optimize Max
+# 60: Optimize Average
+# 61: Optimize Max
+# 62: Optimize Average
+# 63: Optimize Max
+# 64: Optimize Average
+# 65: Optimize Max
+# 66: Optimize Average
+# 67: Optimize Max
+# 68: Optimize Average
+# 69: Optimize Max
+# 70: Optimize Average
+# 71: Optimize Max
+# 72: Optimize Average
+# 73: Optimize Max
+# 74: Optimize Average
+# 75: Optimize Max
+# 76: Optimize Average
+# 77: Optimize Max
+# 78: Optimize Average
+# 79: Optimize Max
+# 80: Optimize Average
+# 81: Optimize Max
+# 82: Optimize Average
+# 83: Optimize Max
+# 84: Optimize Average
+# 85: Optimize Max
+# 86: Optimize Average
+# 87: Optimize Max
+# 88: Optimize Average
+# 89: Optimize Max
+# 90: Optimize Average
+# 91: Optimize Max
+# 92: Optimize Average
+# 93: Optimize Max
+# 94: Optimize Average
+# 95: Optimize Max
+# 96: Optimize Average
+# 97: Optimize Max
+# 98: Optimize Average
+# 99: Optimize Max
+# 100: Optimize Average
+# 101: Optimize Max
+# 102: Optimize Average
+# 103: Optimize Max
+# 104: Optimize Average
+# 105: Optimize Max
+# 106: Optimize Average
+# 107: Optimize Max
+# 108: Optimize Average
+# 109: Optimize Max
+# 110: Optimize Average
+# 111: Optimize Max
+# 112: Optimize Average
+# 113: Optimize Max
+# 114: Optimize Average
+# 115: Optimize Max
+# 116: Optimize Average
+# 117: Optimize Max
+# 118: Optimize Average
+# 119: Optimize Max
+# 120: Optimize Average
+# 121: Optimize Max
+# 122: Optimize Average
+# 123: Optimize Max
+# 124: Optimize Average
+# 125: Optimize Max
+# 126: Optimize Average
+# 127: Optimize Max
+# 128: Optimize Average
+# 129: Optimize Max
+# 130: Optimize Average
+# 131: Optimize Max
+# 132: Optimize Average
+# 133: Optimize Max
+# 134: Optimize Average
+# 135: Optimize Max
+# 136: Optimize Average
+# 137: Optimize Max
+# 138: Optimize Average
+# 139: Optimize Max
+# 140: Optimize Average
+# 141: Optimize Max
+# 142: Optimize Average
+# 143: Optimize Max
+# 144: Optimize Average
+# 145: Optimize Max
+# 146: Optimize Average
+# 147: Optimize Max
+# 148: Optimize Average
+# 149: Optimize Max
+# 150: Optimize Average
+# 151: Optimize Max
+# 152: Optimize Average
+# 153: Optimize Max
+# 154: Optimize Average
+# 155: Optimize Max
+# 156: Optimize Average
+# 157: Optimize Max
+# 158: Optimize Average
+# 159: Optimize Max
+# 160: Optimize Average
+# 161: Optimize Max
+# 162: Optimize Average
+# 163: Optimize Max
+# 164: Optimize Average
+# 165: Optimize Max
+# 166: Optimize Average
+# 167: Optimize Max
+# 168: Optimize Average
+# 169: Optimize Max
+# 170: Optimize Average
+# 171: Optimize Max
+# 172: Optimize Average
+# 173: Optimize Max
+# 174: Optimize Average
+# 175: Optimize Max
+# 176: Optimize Average
+# 177: Optimize Max
+# 178: Optimize Average
+# 179: Optimize Max
+# 180: Optimize Average
+# 181: Optimize Max
+# 182: Optimize Average
+# 183: Optimize Max
+# 184: Optimize Average
+# 185: Optimize Max
+# 186: Optimize Average
+# 187: Optimize Max
+# 188: Optimize Average
+# 189: Optimize Max
+# 190: Optimize Average
+# 191: Optimize Max
+# 192: Optimize Average
+# 193: Optimize Max
+# 194: Optimize Average
+# 195: Optimize Max
+# 196: Optimize Average
+# 197: Optimize Max
+# 198: Optimize Average
+# 199: Optimize Max
+# 200: Optimize Average
+# 201: Optimize Max
+# 202: Optimize Average
+# 203: Optimize Max
+# 204: Optimize Average
+# 205: Optimize Max
+# 206: Optimize Average
+# 207: Optimize Max
+# 208: Optimize Average
+# 209: Optimize Max
+# 210: Optimize Average
+# 211: Optimize Max
+# 212: Optimize Average
+# 213: Optimize Max
+# 214: Optimize Average
+# 215: Optimize Max
+# 216: Optimize Average
+# 217: Optimize Max
+# 218: Optimize Average
+# 219: Optimize Max
+# 220: Optimize Average
+# 221: Optimize Max
+# 222: Optimize Average
+# 223: Optimize Max
+# 224: Optimize Average
+# 225: Optimize Max
+# 226: Optimize Average
+# 227: Optimize Max
+# 228: Optimize Average
+# 229: Optimize Max
+# 230: Optimize Average
+# 231: Optimize Max
+# 232: Optimize Average
+# 233: Optimize Max
+# 234: Optimize Average
+# 235: Optimize Max
+# 236: Optimize Average
+# 237: Optimize Max
+# 238: Optimize Average
+# 239: Optimize Max
+# 240: Optimize Average
+# 241: Optimize Max
+# 242: Optimize Average
+# 243: Optimize Max
+# 244: Optimize Average
+# 245: Optimize Max
+# 246: Optimize Average
+# 247: Optimize Max
+# 248: Optimize Average
+# 249: Optimize Max
+# 250: Optimize Average
+# 251: Optimize Max
+# 252: Optimize Average
+# 253: Optimize Max
+# 254: Optimize Average
+# 255: Optimize Max
+# 256: Optimize Average
+# 257: Optimize Max
+# 258: Optimize Average
+# 259: Optimize Max
+# 260: Optimize Average
+# 261: Optimize Max
+# 262: Optimize Average
+# 263: Optimize Max
+# 264: Optimize Average
+# 265: Optimize Max
+# 266: Optimize Average
+# 267: Optimize Max
+# 268: Optimize Average
+# 269: Optimize Max
+# 270: Optimize Average
+# 271: Optimize Max
+# 272: Optimize Average
+# 273: Optimize Max
+# 274: Optimize Average
+# 275: Optimize Max
+# 276: Optimize Average
+# 277: Optimize Max
+# 278: Optimize Average
+# 279: Optimize Max
+# 280: Optimize Average
+# 281: Optimize Max
+# 282: Optimize Average
+# 283: Optimize Max
+# 284: Optimize Average
+# 285: Optimize Max
+# 286: Optimize Average
+# 287: Optimize Max
+# 288: Optimize Average
+# 289: Optimize Max
+# 290: Optimize Average
+# 291: Optimize Max
+# 292: Optimize Average
+# 293: Optimize Max
+# 294: Optimize Average
+# 295: Optimize Max
+# 296: Optimize Average
+# 297: Optimize Max
+# 298: Optimize Average
+# 299: Optimize Max
+# 300: Optimize Average
+# 301: Optimize Max
+# 302: Optimize Average
+# 303: Optimize Max
+# 304: Optimize Average
+# 305: Optimize Max
+# 306: Optimize Average
+# 307: Optimize Max
+# 308: Optimize Average
+# 309: Optimize Max
+# 310: Optimize Average
+# 311: Optimize Max
+# 312: Optimize Average
+# 313: Optimize Max
+# 314: Optimize Average
+# 315: Optimize Max
+# 316: Optimize Average
+# 317: Optimize Max
+# 318: Optimize Average
+# 319: Optimize Max
+# 320: Optimize Average
+# 321: Optimize Max
+# 322: Optimize Average
+# 323: Optimize Max
+# 324: Optimize Average
+# 325: Optimize Max
+# 326: Optimize Average
+# 327: Optimize Max
+# 328: Optimize Average
+# 329: Optimize Max
+# 330: Optimize Average
+# 331: Optimize Max
+# 332: Optimize Average
+# 333: Optimize Max
+# 334: Optimize Average
+# 335: Optimize Max
+# 336: Optimize Average
+# 337: Optimize Max
+# 338: Optimize Average
+# 339: Optimize Max
+# 340: Optimize Average
+# 341: Optimize Max
+# 342: Optimize Average
+# 343: Optimize Max
+# 344: Optimize Average
+# 345: Optimize Max
+# 346: Optimize Average
+# 347: Optimize Max
+# 348: Optimize Average
+# 349: Optimize Max
+# 350: Optimize Average
+# 351: Optimize Max
+# 352: Optimize Average
+# 353: Optimize Max
+# 354: Optimize Average
+# 355: Optimize Max
+# 356: Optimize Average
+# 357: Optimize Max
+# 358: Optimize Average
+# 359: Optimize Max
+# 360: Optimize Average
+# 361: Optimize Max
+# 362: Optimize Average
+# 363: Optimize Max
+# 364: Optimize Average
+# 365: Optimize Max
+# 366: Optimize Average
+# 367: Optimize Max
+# 368: Optimize Average
+# 369: Optimize Max
+# 370: Optimize Average
+# 371: Optimize Max
+# 372: Optimize Average
+# 373: Optimize Max
+# 374: Optimize Average
+# 375: Optimize Max
+# 376: Optimize Average
+# 377: Optimize Max
+# 378: Optimize Average
+# 379: Optimize Max
+# 380: Optimize Average
+# 381: Optimize Max
+# 382: Optimize Average
+# 383: Optimize Max
+# 384: Optimize Average
+# 385: Optimize Max
+# 386: Optimize Average
+# 387: Optimize Max
+# 388: Optimize Average
+# 389: Optimize Max
+# 390: Optimize Average
+# 391: Optimize Max
+# 392: Optimize Average
+# 393: Optimize Max
+# 394: Optimize Average
+# 395: Optimize Max
+# 396: Optimize Average
+# 397: Optimize Max
+# 398: Optimize Average
+# 399: Optimize Max
+# 400: Optimize Average
+# 401: Optimize Max
+# 402: Optimize Average
+# 403: Optimize Max
+# 404: Optimize Average
+# 405: Optimize Max
+# 406: Optimize Average
+# 407: Optimize Max
+# 408: Optimize Average
+# 409: Optimize Max
+# 410: Optimize Average
+# 411: Optimize Max
+# 412: Optimize Average
+# 413: Optimize Max
+# 414: Optimize Average
+# 415: Optimize Max
+# 416: Optimize Average
+# 417: Optimize Max
+# 418: Optimize Average
+# 419: Optimize Max
+# 420: Optimize Average
+# 421: Optimize Max
+# 422: Optimize Average
+# 423: Optimize Max
+# 424: Optimize Average
+# 425: Optimize Max
+# 426: Optimize Average
+# 427: Optimize Max
+# 428: Optimize Average
+# 429: Optimize Max
+# 430: Optimize Average
+# 431: Optimize Max
+# 432: Optimize Average
+# 433: Optimize Max
+# 434: Optimize Average
+# 435: Optimize Max
+# 436: Optimize Average
+# 437: Optimize Max
+# 438: Optimize Average
+# 439: Optimize Max
+# 440: Optimize Average
+# 441: Optimize Max
+# 442: Optimize Average
+# 443: Optimize Max
+# 444: Optimize Average
+# 445: Optimize Max
+
+0 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000!
000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.0!
00000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.!
000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 !
0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+100 0.517751 0.801139 0.903984 0.950798 0.001 0.001 0.001 0.001 0.163995 1 0.242863 1 0.421632 1 0.521532 1 0.7003 1 0.758137 1 1 1 1 1 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.216574 1 0.279668 1 0.279668 1 0.390084 1 0.568853 1 0.684526 1 0.684526 1 0.758137 1 0.758137 1 0.758137 1 0.831747 1 0.831747 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.001 0.001 0.163995 1 0.0798684 1 0.179768 1 0.1009 1 0.179768 1 0.0588368 1 0.242863 1 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.216574 1 0.0640947 1 0.001 0.001 0.111416 1 0.179768 1 0.116674 1 0.001 0.001 0.0746105 1 0.001 0.001 0.001 0.001 0.0746105 1 0.001 0.001 0.169253 1 0.001 0.001 0.00!
1 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001
Added: development/tests/avida_GA_sex/expected/data/time.dat
===================================================================
--- development/tests/avida_GA_sex/expected/data/time.dat (rev 0)
+++ development/tests/avida_GA_sex/expected/data/time.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,9 @@
+# Avida time data
+# Wed Apr 1 22:17:36 2009
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 2000
+100 0.04 118.185 2000
Added: development/tests/green_beard_instructions/expected/data/archive/099-aaaad.org
===================================================================
--- development/tests/green_beard_instructions/expected/data/archive/099-aaaad.org (rev 0)
+++ development/tests/green_beard_instructions/expected/data/archive/099-aaaad.org 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,133 @@
+# Wed Apr 1 22:17:41 2009
+# Filename........: archive/099-aaaad.org
+# Update Output...: 200
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 52
+# Genotype ID.....: 573
+# Parent Gen ID...: 11
+# Tree Depth......: 2
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 96.000000
+# Gestation Time..: 385
+# Fitness.........: 0.249351
+# Errors..........: 0
+# Genome Size.....: 99
+# Copied Size.....: 99
+# Executed Size...: 96
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# not 0 (0.000000)
+# nand 0 (0.000000)
+# and 0 (0.000000)
+# orn 0 (0.000000)
+# or 0 (0.000000)
+# andn 0 (0.000000)
+# nor 0 (0.000000)
+# xor 0 (0.000000)
+# equ 0 (0.000000)
+
+
+h-alloc
+h-search
+nop-C
+nop-A
+mov-head
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-X
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+h-search
+h-copy
+if-label
+nop-C
+nop-A
+divide-sex
+mov-head
+nop-A
+nop-B
Added: development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org
===================================================================
--- development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org (rev 0)
+++ development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,134 @@
+# Wed Apr 1 22:17:38 2009
+# Filename........: archive/100-aaaaa.org
+# Update Output...: 100
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: -1
+# Genotype ID.....: 1
+# Parent Gen ID...: -1
+# Tree Depth......: 0
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 97.000000
+# Gestation Time..: 389
+# Fitness.........: 0.249357
+# Errors..........: 0
+# Genome Size.....: 100
+# Copied Size.....: 100
+# Executed Size...: 97
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# not 0 (0.000000)
+# nand 0 (0.000000)
+# and 0 (0.000000)
+# orn 0 (0.000000)
+# or 0 (0.000000)
+# andn 0 (0.000000)
+# nor 0 (0.000000)
+# xor 0 (0.000000)
+# equ 0 (0.000000)
+
+
+h-alloc
+h-search
+nop-C
+nop-A
+mov-head
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+h-search
+h-copy
+if-label
+nop-C
+nop-A
+divide-sex
+mov-head
+nop-A
+nop-B
Added: development/tests/green_beard_instructions/expected/data/average.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/average.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/average.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,22 @@
+# Avida Average Data
+# Wed Apr 1 22:17:36 2009
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 97.000000 389.000000 0.000000 0.000000 100.000000 100.000000 97.000000 1.000000 401.000000 401.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+100 100.428 385.566 0.246416 0 99.8672 99.9424 95.2832 1.27885 0.0651629 0.0250627 2.10526 7.22306 -0.216525 0 0
+200 106.772 379.539 0.243103 0 100.607 98.4131 93.5365 1.0615 0.0251889 0.0151134 5.0932 15.1033 -0.188614 0 0
Added: development/tests/green_beard_instructions/expected/data/count.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/count.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/count.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,22 @@
+# Avida count data
+# Wed Apr 1 22:17:36 2009
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 1 0 0 0 401 1 401 1 1 1 0 0
+100 12000 399 312 17 0 0 0 26 27 10 160 222 399 0 0
+200 11910 397 377 30 0 0 0 10 10 6 160 227 397 0 0
Added: development/tests/green_beard_instructions/expected/data/dominant.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/dominant.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/dominant.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,22 @@
+# Avida Dominant Data
+# Wed Apr 1 22:17:36 2009
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 100 0.000000 0.000000 1 0 0 0 0 0.000000 1 100-aaaaa
+100 96.9536 389 0.249238 0.00257069 100 99.9566 97 56 8 2 0 0 0.253886 1 100-aaaaa
+200 96 385 0.249351 0.0025974 99 99.3571 96 3 0 0 2 0 0.254642 573 099-aaaad
Added: development/tests/green_beard_instructions/expected/data/donations.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/donations.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/donations.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Info about organisms giving donations in the population
+# Wed Apr 1 22:17:38 2009
+# 1: update
+# 2: parent made at least one donation
+# 3: parent received at least one donation
+# 4: parent received at least one donation but did not make one
+# 5: parent made at least one edit_donation
+# 6: parent received at least one edit_donation
+# 7: parent received at least one edit_donation but did not make one
+# 8: parent made at least one kin_donation
+# 9: parent received at least one kin_donation
+# 10: parent received at least one kin_donation but did not make one
+# 11: parent made at least one threshgb_donation
+# 12: parent received at least one threshgb_donation
+# 13: parent received at least one threshgb_donation but did not make one
+# 14: parent made at least one quanta_threshgb_donation
+# 15: parent received at least one quanta_threshgb_donation
+# 16: parent received at least one quanta_threshgb_donation but did not make one
+
+100 92.000000 106.000000 55.000000 32.000000 34.000000 28.000000 25.000000 29.000000 20.000000 35.000000 22.000000 0.000000 0.000000 0.000000 0.000000
+200 174 209 80 63 77 51 44 44 16 79 65 0 0 0 0
Added: development/tests/green_beard_instructions/expected/data/instruction.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/instruction.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/instruction.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,37 @@
+# Avida instruction execution data
+# Wed Apr 1 22:17:38 2009
+# 1: Update
+# 2: nop-A
+# 3: nop-B
+# 4: nop-C
+# 5: if-n-equ
+# 6: if-less
+# 7: pop
+# 8: push
+# 9: swap-stk
+# 10: swap
+# 11: shift-r
+# 12: shift-l
+# 13: inc
+# 14: dec
+# 15: add
+# 16: sub
+# 17: nand
+# 18: IO
+# 19: h-alloc
+# 20: divide-sex
+# 21: h-copy
+# 22: h-search
+# 23: mov-head
+# 24: jmp-head
+# 25: get-head
+# 26: if-label
+# 27: set-flow
+# 28: donate-threshgb
+# 29: donate-edt
+# 30: donate-kin
+# 31: donate-rnd
+# 32: nop-X
+
+100 294 36 32537 14 21 12 19 36 16 12 16 25 45 19 35 84 18 399 399 39420 816 39444 17 25 39374 37 35 32 25 20 24
+200 416 48 30216 54 44 34 64 57 43 38 36 46 63 21 37 117 28 397 397 38824 850 38880 15 133 38711 50 79 73 52 34 56
Added: development/tests/green_beard_instructions/expected/data/resource.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/resource.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/resource.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,9 @@
+# Avida resource data
+# Wed Apr 1 22:17:36 2009
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+
+0
+100
+200
Added: development/tests/green_beard_instructions/expected/data/stats.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/stats.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/stats.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,18 @@
+# Generic Statistics Data
+# Wed Apr 1 22:17:36 2009
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.564404 0.564404 0.831040 0.831040 1 0.000000 0.000000 0 0 0
+100 0.0113876 0.563982 0.564404 0.830072 0.83104 0 5.30325 0 0 0 0
+200 0.0253743 0.566326 0.561219 0.835462 0.823755 -1 5.90099 0 1 0 0
Added: development/tests/green_beard_instructions/expected/data/tasks.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/tasks.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/tasks.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,18 @@
+# Avida tasks data
+# Wed Apr 1 22:17:36 2009
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Not
+# 3: Nand
+# 4: And
+# 5: OrNot
+# 6: Or
+# 7: AndNot
+# 8: Nor
+# 9: Xor
+# 10: Equals
+
+0 0 0 0 0 0 0 0 0 0
+100 0 0 0 0 0 0 0 0 0
+200 0 0 0 0 0 0 0 0 0
Added: development/tests/green_beard_instructions/expected/data/time.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/time.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/time.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,10 @@
+# Avida time data
+# Wed Apr 1 22:17:36 2009
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 30
+100 1.00404 7.22306 12000
+200 1.9516 15.1033 11910
Added: development/tests/sex/expected/data/average.dat
===================================================================
--- development/tests/sex/expected/data/average.dat (rev 0)
+++ development/tests/sex/expected/data/average.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida Average Data
+# Wed Apr 1 22:17:41 2009
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 47.000000 189.000000 0.000000 0.000000 50.000000 50.000000 47.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+100 46.846 188.955 0.24807 0 50 50 46.8373 5.41917 0.00277489 0.00277489 0.546653 14.9653 1.0595 0 0
Added: development/tests/sex/expected/data/count.dat
===================================================================
--- development/tests/sex/expected/data/count.dat (rev 0)
+++ development/tests/sex/expected/data/count.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida count data
+# Wed Apr 1 22:17:41 2009
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 1 0 0 0 1 0 1 1 1 1 0 0
+100 86430 2883 532 129 0 0 0 8 6 8 2530 1467 2883 0 0
Added: development/tests/sex/expected/data/dominant.dat
===================================================================
--- development/tests/sex/expected/data/dominant.dat (rev 0)
+++ development/tests/sex/expected/data/dominant.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida Dominant Data
+# Wed Apr 1 22:17:41 2009
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 50 0.000000 0.000000 1 0 0 0 0 0.000000 1 050-aaaaa
+100 47 189 0.248677 0.00529101 50 50 47 1805 2 1 0 1 0.256831 1 050-aaaaa
Added: development/tests/sex/expected/data/resource.dat
===================================================================
--- development/tests/sex/expected/data/resource.dat (rev 0)
+++ development/tests/sex/expected/data/resource.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,8 @@
+# Avida resource data
+# Wed Apr 1 22:17:41 2009
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+
+0
+100
Added: development/tests/sex/expected/data/stats.dat
===================================================================
--- development/tests/sex/expected/data/stats.dat (rev 0)
+++ development/tests/sex/expected/data/stats.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,17 @@
+# Generic Statistics Data
+# Wed Apr 1 22:17:41 2009
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.000000 0.000000 -0.000000 -0.000000 1 0.000000 0.000000 0 0 0
+100 0.00244521 0 0 -0 -0 1 2.84437 0 0 0 0
Added: development/tests/sex/expected/data/tasks.dat
===================================================================
--- development/tests/sex/expected/data/tasks.dat (rev 0)
+++ development/tests/sex/expected/data/tasks.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,17 @@
+# Avida tasks data
+# Wed Apr 1 22:17:41 2009
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Not
+# 3: Nand
+# 4: And
+# 5: OrNot
+# 6: Or
+# 7: AndNot
+# 8: Nor
+# 9: Xor
+# 10: Equals
+
+0 0 0 0 0 0 0 0 0 0
+100 0 0 0 0 0 0 0 0 0
Added: development/tests/sex/expected/data/time.dat
===================================================================
--- development/tests/sex/expected/data/time.dat (rev 0)
+++ development/tests/sex/expected/data/time.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,9 @@
+# Avida time data
+# Wed Apr 1 22:17:41 2009
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 30
+100 2.12928 14.9653 86430
Added: development/tests/sex-asex/expected/data/average.dat
===================================================================
--- development/tests/sex-asex/expected/data/average.dat (rev 0)
+++ development/tests/sex-asex/expected/data/average.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida Average Data
+# Wed Apr 1 22:17:45 2009
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 47.000000 189.000000 0.000000 0.000000 50.000000 50.000000 47.000000 1.000000 3.000000 3.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+100 46.8172 189.527 0.247358 0 50 50 46.8186 5.47573 0.00265957 0.00236407 0.502364 14.9447 0.666916 0 0
Added: development/tests/sex-asex/expected/data/count.dat
===================================================================
--- development/tests/sex-asex/expected/data/count.dat (rev 0)
+++ development/tests/sex-asex/expected/data/count.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida count data
+# Wed Apr 1 22:17:45 2009
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 2 0 0 0 3 0 3 1 1 1 0 0
+100 101520 3384 618 186 0 0 0 9 9 8 2934 1728 3384 0 0
Added: development/tests/sex-asex/expected/data/dominant.dat
===================================================================
--- development/tests/sex-asex/expected/data/dominant.dat (rev 0)
+++ development/tests/sex-asex/expected/data/dominant.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida Dominant Data
+# Wed Apr 1 22:17:45 2009
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 50 0.000000 0.000000 1 0 0 0 0 0.000000 1 050-aaaaa
+100 47 189 0.248677 0.00529101 50 50 47 1474 0 0 0 0 0.255435 2 050-aaaab
Added: development/tests/sex-asex/expected/data/resource.dat
===================================================================
--- development/tests/sex-asex/expected/data/resource.dat (rev 0)
+++ development/tests/sex-asex/expected/data/resource.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,8 @@
+# Avida resource data
+# Wed Apr 1 22:17:45 2009
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+
+0
+100
Added: development/tests/sex-asex/expected/data/stats.dat
===================================================================
--- development/tests/sex-asex/expected/data/stats.dat (rev 0)
+++ development/tests/sex-asex/expected/data/stats.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,17 @@
+# Generic Statistics Data
+# Wed Apr 1 22:17:45 2009
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.000000 0.000000 -0.000000 -0.000000 1 0.000000 0.000000 0 0 0
+100 0.00531726 0 0 -0 -0 0 3.37233 0 0 0 0
Added: development/tests/sex-asex/expected/data/tasks.dat
===================================================================
--- development/tests/sex-asex/expected/data/tasks.dat (rev 0)
+++ development/tests/sex-asex/expected/data/tasks.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,17 @@
+# Avida tasks data
+# Wed Apr 1 22:17:45 2009
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Not
+# 3: Nand
+# 4: And
+# 5: OrNot
+# 6: Or
+# 7: AndNot
+# 8: Nor
+# 9: Xor
+# 10: Equals
+
+0 0 0 0 0 0 0 0 0 0
+100 0 0 0 0 0 0 0 0 0
Added: development/tests/sex-asex/expected/data/time.dat
===================================================================
--- development/tests/sex-asex/expected/data/time.dat (rev 0)
+++ development/tests/sex-asex/expected/data/time.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,9 @@
+# Avida time data
+# Wed Apr 1 22:17:45 2009
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 30
+100 2.13612 14.9447 101520
Added: development/tests/sex-modular/expected/data/average.dat
===================================================================
--- development/tests/sex-modular/expected/data/average.dat (rev 0)
+++ development/tests/sex-modular/expected/data/average.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida Average Data
+# Wed Apr 1 22:17:45 2009
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 47.000000 189.000000 0.000000 0.000000 50.000000 50.000000 47.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+100 46.8623 189.167 0.248011 0 50 50 46.8696 5.59188 0.0013836 0.000691802 0.564856 14.9571 1.533 0 0
Added: development/tests/sex-modular/expected/data/count.dat
===================================================================
--- development/tests/sex-modular/expected/data/count.dat (rev 0)
+++ development/tests/sex-modular/expected/data/count.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida count data
+# Wed Apr 1 22:17:45 2009
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 1 0 0 0 1 0 1 1 1 1 0 0
+100 86670 2891 517 132 0 0 0 4 2 2 2537 1473 2891 0 0
Added: development/tests/sex-modular/expected/data/dominant.dat
===================================================================
--- development/tests/sex-modular/expected/data/dominant.dat (rev 0)
+++ development/tests/sex-modular/expected/data/dominant.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,21 @@
+# Avida Dominant Data
+# Wed Apr 1 22:17:45 2009
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 50 0.000000 0.000000 1 0 0 0 0 0.000000 1 050-aaaaa
+100 47 189 0.248677 0.00529101 50 50 47 1755 1 1 0 0 0.254054 1 050-aaaaa
Added: development/tests/sex-modular/expected/data/resource.dat
===================================================================
--- development/tests/sex-modular/expected/data/resource.dat (rev 0)
+++ development/tests/sex-modular/expected/data/resource.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,8 @@
+# Avida resource data
+# Wed Apr 1 22:17:45 2009
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+
+0
+100
Added: development/tests/sex-modular/expected/data/stats.dat
===================================================================
--- development/tests/sex-modular/expected/data/stats.dat (rev 0)
+++ development/tests/sex-modular/expected/data/stats.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,17 @@
+# Generic Statistics Data
+# Wed Apr 1 22:17:45 2009
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.000000 0.000000 -0.000000 -0.000000 1 0.000000 0.000000 0 0 0
+100 0.00268366 0 0 -0 -0 1 2.86318 0 0 0 0
Added: development/tests/sex-modular/expected/data/tasks.dat
===================================================================
--- development/tests/sex-modular/expected/data/tasks.dat (rev 0)
+++ development/tests/sex-modular/expected/data/tasks.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,17 @@
+# Avida tasks data
+# Wed Apr 1 22:17:45 2009
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Not
+# 3: Nand
+# 4: And
+# 5: OrNot
+# 6: Or
+# 7: AndNot
+# 8: Nor
+# 9: Xor
+# 10: Equals
+
+0 0 0 0 0 0 0 0 0 0
+100 0 0 0 0 0 0 0 0 0
Added: development/tests/sex-modular/expected/data/time.dat
===================================================================
--- development/tests/sex-modular/expected/data/time.dat (rev 0)
+++ development/tests/sex-modular/expected/data/time.dat 2009-04-02 02:17:09 UTC (rev 3202)
@@ -0,0 +1,9 @@
+# Avida time data
+# Wed Apr 1 22:17:45 2009
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 30
+100 2.12936 14.9571 86670
More information about the Avida-cvs
mailing list