[Avida-SVN] r2689 - in branches/uml-merge/tests: . _orchid-avida-mde _orchid-avida-mde/config
hjg at myxo.css.msu.edu
hjg at myxo.css.msu.edu
Thu Jun 26 10:09:42 PDT 2008
Author: hjg
Date: 2008-06-26 13:09:41 -0400 (Thu, 26 Jun 2008)
New Revision: 2689
Added:
branches/uml-merge/tests/_orchid-avida-mde/
branches/uml-merge/tests/_orchid-avida-mde/config/
branches/uml-merge/tests/_orchid-avida-mde/config/N1
branches/uml-merge/tests/_orchid-avida-mde/config/N2
branches/uml-merge/tests/_orchid-avida-mde/config/W1
branches/uml-merge/tests/_orchid-avida-mde/config/W2
branches/uml-merge/tests/_orchid-avida-mde/config/avida.cfg
branches/uml-merge/tests/_orchid-avida-mde/config/custom-uml-instructions.cfg
branches/uml-merge/tests/_orchid-avida-mde/config/environment-uml.cfg
branches/uml-merge/tests/_orchid-avida-mde/config/events.cfg
branches/uml-merge/tests/_orchid-avida-mde/config/hand-code.org
branches/uml-merge/tests/_orchid-avida-mde/config/hydraulic.jar
branches/uml-merge/tests/_orchid-avida-mde/config/seed-model.cfg
branches/uml-merge/tests/_orchid-avida-mde/config/xmi_info
branches/uml-merge/tests/_orchid-avida-mde/test_list
Log:
added avida-mde consistency test
Added: branches/uml-merge/tests/_orchid-avida-mde/config/N1
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/N1 (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/N1 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,13 @@
+#define s (ShortestHopNode_V.predict==205 ||FewestHopNode_V.predict==205)
+#define p (Node_V.predict!=0)
+never { /* !([](p -> <>s)) */
+T0_init:
+ if
+ :: (! ((s)) && (p)) -> goto accept_S4
+ :: (1) -> goto T0_init
+ fi;
+accept_S4:
+ if
+ :: (! ((s))) -> goto accept_S4
+ fi;
+}
Added: branches/uml-merge/tests/_orchid-avida-mde/config/N2
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/N2 (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/N2 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,28 @@
+#define s (Node_V.predict==205)
+#define p (FewestHopNode_V.received==1||ShortestHopNode_V.received==1)
+never { /* !(([](!p)) || ((!p) U s)) */
+T0_init:
+ if
+ :: (! ((s)) && (p)) -> goto accept_S4
+ :: (! ((s)) && (p)) -> goto accept_all
+ :: (! ((s))) -> goto T0_init
+ :: (! ((s)) && (p)) -> goto accept_S13
+ fi;
+accept_S4:
+ if
+ :: (! ((s))) -> goto accept_S4
+ :: (! ((s)) && (p)) -> goto accept_all
+ fi;
+accept_S13:
+ if
+ :: ((p)) -> goto accept_all
+ :: (1) -> goto T0_S13
+ fi;
+T0_S13:
+ if
+ :: ((p)) -> goto accept_all
+ :: (1) -> goto T0_S13
+ fi;
+accept_all:
+ skip
+}
Added: branches/uml-merge/tests/_orchid-avida-mde/config/W1
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/W1 (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/W1 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,17 @@
+#define s (ShortestHopNode_V.predict==205 ||FewestHopNode_V.predict==205)
+#define p (Node_V.predict!=0)
+never { /* !(!(<>(p && <>s))) */
+T0_init:
+ if
+ :: ((p) && (s)) -> goto accept_all
+ :: ((p)) -> goto T0_S4
+ :: (1) -> goto T0_init
+ fi;
+T0_S4:
+ if
+ :: ((s)) -> goto accept_all
+ :: (1) -> goto T0_S4
+ fi;
+accept_all:
+ skip
+}
Added: branches/uml-merge/tests/_orchid-avida-mde/config/W2
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/W2 (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/W2 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,19 @@
+/* Precedence property _expr_p _expr_q */
+#define q (Node_V.predict==205)
+#define p (FewestHopNode_V.received==1||ShortestHopNode_V.received==1)
+never { /* !p U (q && <>p) */
+T0_init:
+if
+:: ((p) && (q)) -> goto accept_all
+:: ((q)) -> goto T0_S4
+:: (! ((p))) -> goto T0_init
+fi;
+T0_S4:
+if
+:: ((p)) -> goto accept_all
+:: (1) -> goto T0_S4
+fi;
+accept_all:
+skip }
+
+
Added: branches/uml-merge/tests/_orchid-avida-mde/config/avida.cfg
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/avida.cfg (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/avida.cfg 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,307 @@
+#############################################################################
+# This file includes all the basic run-time defines for Avida.
+# For more information, see doc/config.html
+#############################################################################
+
+VERSION_ID 2.7.0 # Do not change this value.
+
+### GENERAL_GROUP ###
+# General Settings
+ANALYZE_MODE 0 # 0 = Disabled
+ # 1 = Enabled
+ # 2 = Interactive
+VIEW_MODE 1 # Initial viewer screen
+CLONE_FILE - # Clone file to load
+VERBOSITY 1 # Control output verbosity
+
+### ARCH_GROUP ###
+# Architecture Variables
+WORLD_X 1 # Width of the Avida world
+WORLD_Y 1 # Height of the Avida world
+WORLD_GEOMETRY 2 # 1 = Bounded Grid
+ # 2 = Torus
+ # 3 = Clique
+RANDOM_SEED 0 # Random number seed (0 for based on time)
+HARDWARE_TYPE 0 # 0 = Original CPUs
+ # 1 = New SMT CPUs
+ # 2 = Transitional SMT
+ # 3 = Experimental CPU
+ # 4 = Gene Expression CPU
+
+### CONFIG_FILE_GROUP ###
+# Configuration Files
+DATA_DIR data # Directory in which config files are found
+#INST_SET instset-uml.cfg # File containing instruction set
+INST_SET custom-uml-instructions.cfg # File containing instruction set
+EVENT_FILE events.cfg # File containing list of events during run
+ANALYZE_FILE analyze.cfg # File used for analysis mode
+ENVIRONMENT_FILE environment-uml.cfg # File that describes the environment
+START_CREATURE hand-code.org # Organism to seed the soup
+
+### DEME_GROUP ###
+# Demes and Germlines
+NUM_DEMES 1 # Number of independent groups in the population.
+DEMES_USE_GERMLINE 0 # Whether demes use a distinct germline; 0=off
+DEMES_HAVE_MERIT 0 # Whether demes have merit; 0=no
+GERMLINE_COPY_MUT 0.0075 # Prob. of copy mutations occuring during
+ # germline replication.
+GERMLINE_REPLACES_SOURCE 0 # Whether the source germline is updated
+ # on replication; 0=no.
+GERMLINE_RANDOM_PLACEMENT 0 # Whether the seed for a germline is placed
+ # randomly within the deme; 0=no.
+MAX_DEME_AGE 500 # The maximum age of a deme (in updates) to be
+ # used for age-based replication (default=500).
+
+### REPRODUCTION_GROUP ###
+# Birth and Death
+BIRTH_METHOD 0 # Which organism should be replaced on birth?
+ # 0 = Random organism in neighborhood
+ # 1 = Oldest in neighborhood
+ # 2 = Largest Age/Merit in neighborhood
+ # 3 = None (use only empty cells in neighborhood)
+ # 4 = Random from population (Mass Action)
+ # 5 = Oldest in entire population
+ # 6 = Random within deme
+ # 7 = Organism faced by parent
+ # 8 = Next grid cell (id+1)
+ # 9 = Largest energy used in entire population
+ # 10 = Largest energy used in neighborhood
+PREFER_EMPTY 1 # Give empty cells preference in offsping placement?
+ALLOW_PARENT 1 # Allow births to replace the parent organism?
+DEATH_METHOD 2 # 0 = Never die of old age.
+ # 1 = Die when inst executed = AGE_LIMIT (+deviation)
+ # 2 = Die when inst executed = length*AGE_LIMIT (+dev)
+AGE_LIMIT 20 # Modifies DEATH_METHOD
+AGE_DEVIATION 0 # Creates a distribution around AGE_LIMIT
+ALLOC_METHOD 0 # (Orignal CPU Only)
+ # 0 = Allocated space is set to default instruction.
+ # 1 = Set to section of dead genome (Necrophilia)
+ # 2 = Allocated space is set to random instruction.
+DIVIDE_METHOD 1 # 0 = Divide leaves state of mother untouched.
+ # 1 = Divide resets state of mother
+ # (after the divide, we have 2 children)
+ # 2 = Divide resets state of current thread only
+ # (does not touch possible parasite threads)
+INJECT_METHOD 0 # 0 = Leaves the parasite thread state untouched.
+ # 1 = Resets the calling thread state on inject
+GENERATION_INC_METHOD 1 # 0 = Only the generation of the child is
+ # increased on divide.
+ # 1 = Both the generation of the mother and child are
+ # increased on divide (good with DIVIDE_METHOD 1).
+
+### RECOMBINATION_GROUP ###
+# Sexual Recombination and Modularity
+RECOMBINATION_PROB 1.0 # probability of recombination in div-sex
+MAX_BIRTH_WAIT_TIME -1 # Updates incipiant orgs can wait for crossover
+MODULE_NUM 0 # number of modules in the genome
+CONT_REC_REGS 1 # are (modular) recombination regions continuous
+CORESPOND_REC_REGS 1 # are (modular) recombination regions swapped randomly
+ # or with corresponding positions?
+TWO_FOLD_COST_SEX 0 # 1 = only one recombined offspring is born.
+ # 2 = both offspring are born
+SAME_LENGTH_SEX 0 # 0 = recombine with any genome
+ # 1 = only recombine w/ same length
+
+### DIVIDE_GROUP ###
+# Divide Restrictions
+CHILD_SIZE_RANGE 2.0 # Maximal differential between child and parent sizes.
+MIN_COPIED_LINES 0.5 # Code fraction which must be copied before divide.
+MIN_EXE_LINES 0.5 # Code fraction which must be executed before divide.
+REQUIRE_ALLOCATE 1 # (Original CPU Only) Require allocate before divide?
+REQUIRED_TASK -1 # Task ID required for successful divide.
+IMMUNITY_TASK -1 # Task providing immunity from the required task.
+REQUIRED_REACTION -1 # Reaction ID required for successful divide.
+IMPLICIT_REPRO_BONUS 0 # Immediately call Inst_Repro to divide when upon achieving this bonus. 0 = OFF
+IMPLICIT_REPRO_TIME 0 # Immediately call Inst_Repro after this many cpu cycles. 0 = OFF
+
+### MUTATION_GROUP ###
+# Mutations
+POINT_MUT_PROB 0.0 # Mutation rate (per-location per update)
+COPY_MUT_PROB 0.0 # Mutation rate (per copy)
+INS_MUT_PROB 0.0 # Insertion rate (per site, applied on divide)
+DEL_MUT_PROB 0.0 # Deletion rate (per site, applied on divide)
+DIV_MUT_PROB 0.0 # Mutation rate (per site, applied on divide)
+DIVIDE_MUT_PROB 0.0 # Mutation rate (per divide)
+DIVIDE_INS_PROB 0.0 # Insertion rate (per divide)
+DIVIDE_DEL_PROB 0.0 # Deletion rate (per divide)
+DIVIDE_SLIP_PROB 0.0 # Slip rate (per divide) - creates large deletions/duplications
+PARENT_MUT_PROB 0.0 # Per-site, in parent, on divide
+SPECIAL_MUT_LINE -1 # If this is >= 0, ONLY this line is mutated
+INJECT_INS_PROB 0.0 # Insertion rate (per site, applied on inject)
+INJECT_DEL_PROB 0.0 # Deletion rate (per site, applied on inject)
+INJECT_MUT_PROB 0.0 # Mutation rate (per site, applied on inject)
+META_COPY_MUT 0.0 # Prob. of copy mutation rate changing (per gen)
+META_STD_DEV 0.0 # Standard deviation of meta mutation size.
+MUT_RATE_SOURCE 1 # 1 = Mutation rates determined by environment.
+ # 2 = Mutation rates inherited from parent.
+
+### REVERSION_GROUP ###
+# Mutation Reversion
+# These slow down avida a lot, and should be set to 0.0 normally.
+REVERT_FATAL 0.0 # Should any mutations be reverted on birth?
+REVERT_DETRIMENTAL 0.0 # 0.0 to 1.0; Probability of reversion.
+REVERT_NEUTRAL 0.0 #
+REVERT_BENEFICIAL 0.0 #
+STERILIZE_FATAL 0.0 # Should any mutations clear (kill) the organism?
+STERILIZE_DETRIMENTAL 0.0 #
+STERILIZE_NEUTRAL 0.0 #
+STERILIZE_BENEFICIAL 0.0 #
+FAIL_IMPLICIT 0 # Should copies that failed *not* due to mutations
+ # be eliminated?
+NEUTRAL_MAX 0.0 # The percent benifical change from parent fitness
+ # to be considered neutral.
+NEUTRAL_MIN 0.0 # The percent deleterious change from parent fitness
+ # to be considered neutral.
+
+### TIME_GROUP ###
+# Time Slicing
+AVE_TIME_SLICE 30 # Ave number of insts per org per update
+SLICING_METHOD 1 # 0 = CONSTANT: all organisms get default...
+ # 1 = PROBABILISTIC: Run _prob_ proportional to merit.
+ # 2 = INTEGRATED: Perfectly integrated deterministic.
+BASE_MERIT_METHOD 4 # 0 = Constant (merit independent of size)
+ # 1 = Merit proportional to copied size
+ # 2 = Merit prop. to executed size
+ # 3 = Merit prop. to full size
+ # 4 = Merit prop. to min of executed or copied size
+ # 5 = Merit prop. to sqrt of the minimum size
+ # 6 = Merit prop. to num times MERIT_BONUS_INST is in genome.
+BASE_CONST_MERIT 100 # Base merit when BASE_MERIT_METHOD set to 0
+DEFAULT_BONUS 1.0 # Initial bonus before any tasks
+MERIT_DEFAULT_BONUS 0 # Scale the merit of an offspring by the default bonus
+ # rather than the accumulated bonus of the parent?
+MERIT_BONUS_INST 0 # in BASE_MERIT_METHOD 6, this sets which instruction counts
+ # (-1 = none, 0 = First in INST_SET.)
+MERIT_BONUS_EFFECT 0 # in BASE_MERIT_METHOD 6, this sets how much merit is earned
+ # per instruction (-1 = penalty, 0 = no effect.)
+FITNESS_VALLEY 0 # in BASE_MERIT_METHOD 6, this creates valleys from
+ # FITNESS_VALLEY_START to FITNESS_VALLEY_STOP
+ # (0 = off, 1 = on)
+FITNESS_VALLEY_START 0 # if FITNESS_VALLEY = 1, orgs with num_key_instructions
+ # from FITNESS_VALLEY_START to FITNESS_VALLEY_STOP
+ # get fitness 1 (lowest)
+FITNESS_VALLEY_STOP 0 # if FITNESS_VALLEY = 1, orgs with num_key_instructions
+ # from FITNESS_VALLEY_START to FITNESS_VALLEY_STOP
+ # get fitness 1 (lowest)
+MAX_CPU_THREADS 1 # Number of Threads a CPU can spawn
+THREAD_SLICING_METHOD 0 # Formula for and organism's thread slicing
+ # (num_threads-1) * THREAD_SLICING_METHOD + 1
+ # 0 = One thread executed per time slice.
+ # 1 = All threads executed each time slice.
+MAX_LABEL_EXE_SIZE 1 # Max nops marked as executed when labels are used
+MERIT_GIVEN 0.0 # Fraction of merit donated with 'donate' command
+MERIT_RECEIVED 0.0 # Multiplier of merit given with 'donate' command
+MAX_DONATE_KIN_DIST -1 # Limit on distance of relation for donate; -1=no max
+MAX_DONATE_EDIT_DIST -1 # Limit on genetic (edit) distance for donate; -1=no max
+MIN_GB_DONATE_THRESHOLD -1 # threshold green beard donates only to orgs above this
+ # donation attempt threshold; -1=no thresh
+DONATE_THRESH_QUANTA 10 # The size of steps between quanta donate thresholds
+MAX_DONATES 1000000 # Limit on number of donates organisms are allowed.
+PRECALC_MERIT 0 # Pre-calculate merit at birth (unlimited resources only).
+
+### GENEOLOGY_GROUP ###
+# Geneology
+TRACK_MAIN_LINEAGE 1 # Keep all ancestors of the active population?
+ # 0=no, 1=yes, 2=yes,w/sexual population
+THRESHOLD 3 # Number of organisms in a genotype needed for it
+ # to be considered viable.
+GENOTYPE_PRINT 0 # 0/1 (off/on) Print out all threshold genotypes?
+GENOTYPE_PRINT_DOM 0 # Print out a genotype if it stays dominant for
+ # this many updates. (0 = off)
+SPECIES_THRESHOLD 2 # max failure count for organisms to be same species
+SPECIES_RECORDING 0 # 1 = full, 2 = limited search (parent only)
+SPECIES_PRINT 0 # 0/1 (off/on) Print out all species?
+TEST_CPU_TIME_MOD 20 # Time allocated in test CPUs (multiple of length)
+
+### LOG_GROUP ###
+# Log Files
+LOG_CREATURES 0 # 0/1 (off/on) toggle to print file.
+LOG_GENOTYPES 0 # 0 = off, 1 = print ALL, 2 = print threshold ONLY.
+LOG_THRESHOLD 0 # 0/1 (off/on) toggle to print file.
+LOG_SPECIES 0 # 0/1 (off/on) toggle to print file.
+
+### LINEAGE_GROUP ###
+# Lineage
+# NOTE: This should probably be called "Clade"
+# This one can slow down avida a lot. It is used to get an idea of how
+# often an advantageous mutation arises, and where it goes afterwards.
+# Lineage creation options are. Works only when LOG_LINEAGES is set to 1.
+# 0 = manual creation (on inject, use successive integers as lineage labels).
+# 1 = when a child's (potential) fitness is higher than that of its parent.
+# 2 = when a child's (potential) fitness is higher than max in population.
+# 3 = when a child's (potential) fitness is higher than max in dom. lineage
+# *and* the child is in the dominant lineage, or (2)
+# 4 = when a child's (potential) fitness is higher than max in dom. lineage
+# (and that of its own lineage)
+# 5 = same as child's (potential) fitness is higher than that of the
+# currently dominant organism, and also than that of any organism
+# currently in the same lineage.
+# 6 = when a child's (potential) fitness is higher than any organism
+# currently in the same lineage.
+# 7 = when a child's (potential) fitness is higher than that of any
+# organism in its line of descent
+LOG_LINEAGES 0 #
+LINEAGE_CREATION_METHOD 0 #
+
+### ORGANISM_NETWORK_GROUP ###
+# Organism Network Communication
+NET_ENABLED 0 # Enable Network Communication Support
+NET_DROP_PROB 0.0 # Message drop rate
+NET_MUT_PROB 0.0 # Message corruption probability
+NET_MUT_TYPE 0 # Type of message corruption. 0 = Random Single Bit, 1 = Always Flip Last
+NET_STYLE 0 # Communication Style. 0 = Random Next, 1 = Receiver Facing
+
+### BUY_SELL_GROUP ###
+# Buying and Selling Parameters
+SAVE_RECEIVED 0 # Enable storage of all inputs bought from other orgs
+BUY_PRICE 0 # price offered by organisms attempting to buy
+SELL_PRICE 0 # price offered by organisms attempting to sell
+
+### ANALYZE_GROUP ###
+# Analysis Settings
+MAX_CONCURRENCY -1 # Number of concurrent analyze threads
+ANALYZE_OPTION_1 # String variable accessible from analysis scripts
+ANALYZE_OPTION_2 # String variable accessible from analysis scripts
+
+### ENERGY_GROUP ###
+# Energy Settings
+ENERGY_ENABLED 0 # Enable Energy Model. 0/1 (off/on)
+ENERGY_GIVEN_ON_INJECT 0 # Energy given to organism upon injection.
+ENERGY_GIVEN_AT_BIRTH 0 # Energy given to offspring upon birth.
+FRAC_PARENT_ENERGY_GIVEN_AT_BIRTH 0.5 # Fraction of perent's energy given to offspring.
+FRAC_ENERGY_DECAY_AT_BIRTH 0.0 # Fraction of energy lost due to decay during reproduction.
+NUM_INST_EXC_BEFORE_0_ENERGY 0 # Number of instructions executed before energy is exhausted.
+ENERGY_CAP -1 # Maximum amount of energy that can be stored in an organism. -1 means the cap is set to Max Int
+APPLY_ENERGY_METHOD 0 # When should rewarded energy be applied to current energy?
+ # 0 = on divide
+ # 1 = on completion of task
+ # 2 = on sleep
+ENERGY_VERBOSE 0 # Print energy and merit values. 0/1 (off/on)
+LOG_SLEEP_TIMES 0 # Log sleep start and end times. 0/1 (off/on)
+ # WARNING: may use lots of memory.
+
+### SECOND_PASS_GROUP ###
+# Tracking metrics known after the running experiment previously
+TRACK_CCLADES 0 # Enable tracking of coalescence clades
+TRACK_CCLADES_IDS coalescence.ids # File storing coalescence IDs
+
+### GX_GROUP ###
+# Gene Expression CPU Settings
+MAX_PROGRAMIDS 16 # Maximum number of programids an organism can create.
+MAX_PROGRAMID_AGE 2000 # Max number of CPU cycles a programid executes before it is removed.
+IMPLICIT_GENE_EXPRESSION 0 # Create executable programids from the genome without explicit allocation and copying?
+IMPLICIT_BG_PROMOTER_RATE 0.0 # Relative rate of non-promoter sites creating programids.
+IMPLICIT_TURNOVER_RATE 0.0 # Number of programids recycled per CPU cycle. 0 = OFF
+IMPLICIT_MAX_PROGRAMID_LENGTH 0 # Creation of an executable programid terminates after this many instructions. 0 = disabled
+
+### PROMOTER_GROUP ###
+# Promoters
+PROMOTERS_ENABLED 0 # Use the promoter/terminator execution scheme.
+ # Certain instructions must also be included.
+PROMOTER_PROCESSIVITY 1.0 # Chance of not terminating after each cpu cycle.
+PROMOTER_PROCESSIVITY_INST 1.0 # Chance of not terminating after each instruction.
+PROMOTER_BG_STRENGTH 0 # Probability of positions that are not promoter
+ # instructions initiating execution (promoters are 1).
+REGULATION_STRENGTH 1 # Strength added or subtracted to a promoter by regulation.
+REGULATION_DECAY_FRAC 0.1 # Fraction of regulation that decays away.
+ # Max regulation = 2^(REGULATION_STRENGTH/REGULATION_DECAY_FRAC)
Added: branches/uml-merge/tests/_orchid-avida-mde/config/custom-uml-instructions.cfg
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/custom-uml-instructions.cfg (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/custom-uml-instructions.cfg 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,26 @@
+nop-A 1
+nop-B 1
+nop-C 1
+repro 1
+addTransL 1
+addTransT 1
+move-rel-orig 1
+move-rel-dest 1
+move-rel-tl 1
+move-rel-tr 1
+move-rel-gu 1
+move-rel-act 1
+next-orig 1
+next-dest 1
+next-tl 1
+next-tr 1
+next-act 1
+next-gu 1
+move-abs-orig 1
+move-abs-dest 1
+move-abs-tl 1
+move-abs-tr 1
+move-abs-gu 1
+move-abs-act 1
+start-loop 1
+end-loop 1
Added: branches/uml-merge/tests/_orchid-avida-mde/config/environment-uml.cfg
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/environment-uml.cfg (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/environment-uml.cfg 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,25 @@
+##############################################################################
+#
+# This is the setup file for the task/resource system. From here, you can
+# setup the available resources (including their inflow and outflow rates) as
+# well as the reactions that the organisms can trigger by performing tasks.
+#
+# This file is currently setup to reward 9 tasks, all of which use the
+# "infinite" resource, which is undepletable.
+#
+# For information on how to use this file, see: doc/environment.html
+# For other sample environments, see: source/support/config/
+#
+##############################################################################
+
+# Designed to evolve obstacle avoidance.
+#REACTION ND non-determinism process:value=1.0:type=pow requisite:max_count=1
+REACTION SC scens process:value=1.0:type=pow requisite:max_count=1
+REACTION HYDRA hydra process:value=1.0:type=pow requisite:max_count=1
+REACTION WIT1 spin-w1 process:value=1.0:type=pow requisite:max_count=1
+REACTION SPIN1 spin1 process:value=1.0:type=pow requisite:max_count=1
+REACTION WIT2 spin-w2 process:value=1.0:type=pow requisite:max_count=1
+REACTION SPIN2 spin2 process:value=1.0:type=pow requisite:max_count=1
+REACTION MIN-TR min-trans process:value=5.0:type=pow requisite:max_count=1
+#REACTION EXMI export-xmi process:value=1.0:type=pow requisite:max_count=1
+#REACTION CP check-props process:value=1.0:type=mult requisite:max_count=1
Added: branches/uml-merge/tests/_orchid-avida-mde/config/events.cfg
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/events.cfg (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/events.cfg 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,51 @@
+##############################################################################
+#
+# This is the setup file for the events system. From here, you can
+# configure any actions that you want to have happen during the course of
+# an experiment, including setting the times for data collection.
+#
+# basic syntax: [trigger] [start:interval:stop] [action/event] [arguments...]
+#
+# This file is currently setup to record key information every 100 updates.
+#
+# For information on how to use this file, see: doc/events.html
+# For other sample event configurations, see: support/config/
+#
+##############################################################################
+
+# Inject all cells with the default organism
+#u 0 InjectAll
+
+# Compete demes
+#u 100:100:end CompeteDemes 7 # compete UML models
+
+
+# Print all of the standard data files...
+u 0:100:end PrintAverageData # Save info about they average genotypes
+u 0:100:end PrintDominantData # Save info about most abundant genotypes
+u 0:100:end PrintStatsData # Collect satistics about entire pop.
+u 0:100:end PrintCountData # Count organisms, genotypes, species, etc.
+u 0:10:end PrintTasksData # Save organisms counts for each task.
+u 0:100:end PrintTimeData # Track time conversion (generations, etc.)
+u 0:100:end PrintResourceData # Track resource abundance.
+##u 0:100:end PrintDemeUMLStats # Track information about the deme.
+u 0:1:end PrintUMLData # Track information about the UML Model
+#u 0:1:end PrintPropertyData # Track Properties of the UML Model
+
+# A few data files not printed by default
+#u 0:1 PrintDominantGenotype dominant-genotype # Save the most abundant genotypes
+#u 0:1000 PrintGenotypes all # Save the most abundant genotypes
+# u 100:100:end PrintErrorData # Std. Error on averages.
+# u 100:100:end PrintVarianceData # Variance on averages.
+# u 100:100:end PrintTotalsData # Total counts over entire run.
+# u 100:100:end PrintTasksExeData # Num. times tasks have been executed.
+# u 100:100:end PrintTasksQualData # Task quality information
+
+# Setup the exit time and full population data collection.
+u 500:500 SavePopulation # Save current state of population.
+u 500:500 SaveHistoricPopulation # Save ancestors of current population.
+u 0:20 ExitModelsPassed2PropertyGreater 5
+u 0:10 ExitElapsedTime 36000
+u 10 exit # exit
+
+
Added: branches/uml-merge/tests/_orchid-avida-mde/config/hand-code.org
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/hand-code.org (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/hand-code.org 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,30 @@
+start-loop
+addTransL # create first one
+next-tl # tl 1
+addTransL # add transL
+next-tl # tl 2
+addTransL
+move-abs-orig
+nop-A
+next-tl # tl 3
+addTransL
+next-tl # tl 4
+addTransL
+next-tl # tl 5
+addTransL
+next-tl # tl 6
+addTransL
+next-tl # tl 7
+addTransL
+next-tl # tl 8
+addTransL
+next-tl # tl 9
+addTransL
+next-tl # 10
+addTransL
+next-tl # 11
+addTransL
+next-tl #12
+addTransL
+end-loop
+repro
Added: branches/uml-merge/tests/_orchid-avida-mde/config/hydraulic.jar
===================================================================
(Binary files differ)
Property changes on: branches/uml-merge/tests/_orchid-avida-mde/config/hydraulic.jar
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Added: branches/uml-merge/tests/_orchid-avida-mde/config/seed-model.cfg
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/seed-model.cfg (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/seed-model.cfg 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,193 @@
+==MODEL==
+number-of-classes: 1
+hydra: 0
+witness: 1
+gen-mod: 0
+related-class-mode: 3
+
+==CLASS==
+name: Node
+==ATTRIBUTES==
+==END==
+==OPERATIONS==
+==END==
+==ASSOCIATIONS==
+==END==
+==TRIGGERS==
+11 setDepth XDE-A8F47A1B-9176-48C0-9560-8D5C9B6640B5
+21 setSpeed XDE-4AE289D2-E012-4D8F-971A-16DF0C7C1087
+31 setUpstreamDepth XDE-CE55BE32-A8E3-46DA-8F60-F1977A8CEC98
+41 setUpstreamSpeed XDE-267808B8-8377-4F2A-B169-3D7660ADD557
+==END==
+==GUARDS==
+1 CPUSpeed!=0
+2 pointDepth!=0
+3 pointSpeed!=0
+4 upDepth!=0
+5 upSpeed!=0
+==END==
+==ACTIONS==
+11 CPUSpeed:=100
+21 CPUSpeed:=200
+31 CPUSpeed:=400
+41 ^PressureSensor.getDepth()
+51 ^DigiCamSensor.getSpeed()
+61 ^UpstreamNode.getDepth()
+71 ^UpstreamNode.getSpeed()
+81 predict:=pointDepth+pointSpeed+upDepth+upSpeed
+91 ^ShortestHopNode.sendPredictionUsingBlueTooth(predict)
+101 ^ShortestHopNode.sendPredictionUsingWiFi(predict)
+111 ^ShortestHopNode.sendPredictionUsingGPRS(predict)
+121 ^FewestHopNode.sendPredictionUsingBlueTooth(predict)
+131 ^FewestHopNode.sendPredictionUsingWiFi(predict)
+141 ^FewestHopNode.sendPredictionUsingGPRS(predict)
+==END==
+
+==STATE=DIAGRAM==
+states: 10
+==TRANSITIONS==
+==END==
+==SCENARIO==
+0 -1 myDepth
+-utility-
+1 FaultTolerance 0
+1 EnergyEfficiency 1
+1 Accuracy 0
+-end-utility-
+s []/CPUSpeed:=100
+s []/^PressureSensor.getDepth()
+s setDepth[]/
+==END==
+==SCENARIO==
+0 -1 myDepth
+-utility-
+1 FaultTolerance 0
+1 EnergyEfficiency .5
+1 Accuracy .5
+-end-utility-
+s []/CPUSpeed:=200
+s []/^PressureSensor.getDepth()
+s setDepth[]/
+==END==
+==SCENARIO==
+0 -1 myDepth
+-utility-
+1 FaultTolerance 0
+1 EnergyEfficiency 0
+1 Accuracy 1
+-end-utility-
+s []/CPUSpeed:=400
+s []/^PressureSensor.getDepth()
+s setDepth[]/
+==END==
+==SCENARIO==
+0 -1 mySpeed
+-utility-
+1 FaultTolerance .5
+1 EnergyEfficiency .5
+1 Accuracy .5
+-end-utility-
+s []/^DigiCamSensor.getSpeed()
+s setSpeed[]/
+==END==
+==SCENARIO==
+0 -1 upDepth
+-utility-
+1 FaultTolerance .5
+1 EnergyEfficiency .5
+1 Accuracy .5
+-end-utility-
+s []/^UpstreamNode.getDepth()
+s setUpstreamDepth[]/
+==END==
+==SCENARIO==
+0 -1 upSpeed
+-utility-
+1 FaultTolerance .5
+1 EnergyEfficiency .5
+1 Accuracy .5
+-end-utility-
+s []/^UpstreamNode.getSpeed()
+s setUpstreamSpeed[]/
+==END==
+==SCENARIO==
+0 -1 transmit
+-utility-
+1 FaultTolerance 0
+1 EnergyEfficiency 2
+1 Accuracy 0
+-end-utility-
+s []/predict:=pointDepth+pointSpeed+upDepth+upSpeed
+s []/^ShortestHopNode.sendPredictionUsingBlueTooth(predict)
+==END==
+==SCENARIO==
+0 -1 transmit
+-utility-
+1 FaultTolerance .5
+1 EnergyEfficiency 1.5
+1 Accuracy 0
+-end-utility-
+s []/predict:=pointDepth+pointSpeed+upDepth+upSpeed
+s []/^ShortestHopNode.sendPredictionUsingWiFi(predict)
+==END==
+==SCENARIO==
+0 -1 transmit
+-utility-
+1 FaultTolerance 1
+1 EnergyEfficiency 1
+1 Accuracy 1
+-end-utility-
+s []/predict:=pointDepth+pointSpeed+upDepth+upSpeed
+s []/^ShortestHopNode.sendPredictionUsingGPRS(predict)
+==END==
+==SCENARIO==
+0 -1 transmit
+-utility-
+1 FaultTolerance .75
+1 EnergyEfficiency .5
+1 Accuracy .75
+-end-utility-
+s []/predict:=pointDepth+pointSpeed+upDepth+upSpeed
+s []/^FewestHopNode.sendPredictionUsingBlueTooth(predict)
+==END==
+==SCENARIO==
+0 -1 transmit
+-utility-
+1 FaultTolerance .9
+1 EnergyEfficiency .2
+1 Accuracy .9
+-end-utility-
+s []/predict:=pointDepth+pointSpeed+upDepth+upSpeed
+s []/^FewestHopNode.sendPredictionUsingWiFi(predict)
+==END==
+==SCENARIO==
+0 -1 transmit
+-utility-
+1 FaultTolerance 1
+1 EnergyEfficiency 0
+1 Accuracy 1
+-end-utility-
+s []/predict:=pointDepth+pointSpeed+upDepth+upSpeed
+s []/^FewestHopNode.sendPredictionUsingGPRS(predict)
+==END==
+==TRANSITION=LABELS==
+01 0 0 1
+02 0 0 2
+03 0 0 3
+11 0 0 4
+21 1 0 0
+31 0 0 5
+41 2 0 0
+51 0 0 6
+61 3 0 0
+71 0 0 7
+81 4 0 0
+91 0 0 8
+10 0 0 9
+13 0 0 10
+14 0 0 11
+15 0 0 12
+16 0 0 13
+17 0 0 14
+==END==
+==END=CLASS==
Added: branches/uml-merge/tests/_orchid-avida-mde/config/xmi_info
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/config/xmi_info (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/config/xmi_info 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,697 @@
+=XMI-BEGIN==================
+<?xml version="1.0" encoding="UTF-8" ?>
+<!-- <!DOCTYPE XMI SYSTEM "C:\Program Files\Rational\XDE\Addins\XMI\DTD\XMI11UML14.dtd"> -->
+<XMI xmi.version="1.1" xmlns:UML="http://www.omg.org/UML" xmlns:xlink="http://www.w3c.org/xlink" xmlns:XDE="http://www.rational.com/products/XDE">
+ <XMI.header>
+ <XMI.documentation>
+ <XMI.exporter>Rational XDE</XMI.exporter>
+ <XMI.exporterVersion>1.5</XMI.exporterVersion>
+ </XMI.documentation>
+ <XMI.metamodel xmi.name="UML" xmi.version="1.4"/>
+ </XMI.header>
+ <XMI.content>
+ <UML:Model xmi.id="XDE-FA722DB8-38C8-4335-8FD2-DCDBE281CABF" name="gridstixNormal" isSpecification="false">
+ <UML:Namespace.ownedElement>
+ <UML:Association xmi.id="XDE-CAB33A38-4C97-4A55-9116-EEC7A91DD9F1" name="" isSpecification="false">
+ <UML:Association.connection>
+ <UML:AssociationEnd xmi.id="XDE-2CE9B285-31F3-4CE1-976D-1DF8C65157B6" aggregation="none" isNavigable="true" participant="XDE-C99B7FA8-6BED-4179-ACDD-913FFAAFB81E" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="" isSpecification="false"/>
+ <UML:AssociationEnd xmi.id="XDE-F66AA9B0-83EA-4AF6-BFE8-06DED52253B4" aggregation="none" isNavigable="true" participant="XDE-D14BF0DA-20D5-43C6-8DE1-714E1B1AF389" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="" isSpecification="false"/>
+ </UML:Association.connection>
+ </UML:Association>
+ <UML:Association xmi.id="XDE-52DD71E9-EC09-4167-A8D3-55625DB3573C" name="" isSpecification="false">
+ <UML:Association.connection>
+ <UML:AssociationEnd xmi.id="XDE-EC27078F-1E19-46F6-85A5-AA8BFE3DF5B6" aggregation="none" isNavigable="true" participant="XDE-7AD01A65-50DA-4A07-9B42-911822CD8472" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="" isSpecification="false"/>
+ <UML:AssociationEnd xmi.id="XDE-136E30BC-FC8D-40FA-AE01-E19132CDF84D" aggregation="none" isNavigable="true" participant="XDE-D14BF0DA-20D5-43C6-8DE1-714E1B1AF389" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="" isSpecification="false"/>
+ </UML:Association.connection>
+ </UML:Association>
+ <UML:Association xmi.id="XDE-530AF5F1-9B35-4CF6-B19D-8216E818822F" name="" isSpecification="false">
+ <UML:Association.connection>
+ <UML:AssociationEnd xmi.id="XDE-55EFB812-5E69-4906-A7AE-95201CB84028" aggregation="none" isNavigable="true" participant="XDE-2811F0FA-B385-455F-BA51-2D83EBD7AA5F" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="" isSpecification="false"/>
+ <UML:AssociationEnd xmi.id="XDE-A2A2F969-DBBA-4CC2-B8BA-120AA2CF663E" aggregation="none" isNavigable="true" participant="XDE-D14BF0DA-20D5-43C6-8DE1-714E1B1AF389" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="" isSpecification="false"/>
+ </UML:Association.connection>
+ </UML:Association>
+=END========================
+=CLASS======================
+ <UML:Class xmi.id="XDE-D14BF0DA-20D5-43C6-8DE1-714E1B1AF389" isActive="false" isAbstract="false" isLeaf="false" isRoot="false" visibility="public" name="Node" isSpecification="false">
+ <UML:Classifier.feature>
+ <UML:Attribute xmi.id="XDE-DB15EF47-EC22-4EEA-87DA-EF003857F712" changeability="changeable" targetScope="instance" ownerScope="instance" visibility="public" ordering="unordered" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="CPUSpeed" isSpecification="false">
+ <UML:Attribute.initialValue>
+ <UML:Expression language="" body="0"/>
+ </UML:Attribute.initialValue>
+ </UML:Attribute>
+ <UML:Attribute xmi.id="XDE-D669A8FE-1F53-410F-B181-0827434E636A" changeability="changeable" targetScope="instance" ownerScope="instance" visibility="public" ordering="unordered" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="pointDepth" isSpecification="false">
+ <UML:Attribute.initialValue>
+ <UML:Expression language="" body="0"/>
+ </UML:Attribute.initialValue>
+ </UML:Attribute>
+ <UML:Attribute xmi.id="XDE-2C52EB68-0EB1-43FC-B556-45BDAEA40C8E" changeability="changeable" targetScope="instance" ownerScope="instance" visibility="public" ordering="unordered" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="pointSpeed" isSpecification="false">
+ <UML:Attribute.initialValue>
+ <UML:Expression language="" body="0"/>
+ </UML:Attribute.initialValue>
+ </UML:Attribute>
+ <UML:Attribute xmi.id="XDE-ED9F8371-905F-4CE0-8916-ADC7D9B17EDE" changeability="changeable" targetScope="instance" ownerScope="instance" visibility="public" ordering="unordered" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="upDepth" isSpecification="false">
+ <UML:Attribute.initialValue>
+ <UML:Expression language="" body="0"/>
+ </UML:Attribute.initialValue>
+ </UML:Attribute>
+ <UML:Attribute xmi.id="XDE-2109D770-486B-4FAD-9F5F-B672E0C49CE6" changeability="changeable" targetScope="instance" ownerScope="instance" visibility="public" ordering="unordered" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="upSpeed" isSpecification="false">
+ <UML:Attribute.initialValue>
+ <UML:Expression language="" body="0"/>
+ </UML:Attribute.initialValue>
+ </UML:Attribute>
+ <UML:Attribute xmi.id="XDE-DE98000F-C01D-4E20-A6CB-F95A8631CF0F" changeability="changeable" targetScope="instance" ownerScope="instance" visibility="public" ordering="unordered" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="predict" isSpecification="false">
+ <UML:Attribute.initialValue>
+ <UML:Expression language="" body="0"/>
+ </UML:Attribute.initialValue>
+ </UML:Attribute>
+ <UML:Attribute xmi.id="XDE-9072D370-7AD7-44F9-8FD6-52AB8368E57E" changeability="changeable" targetScope="instance" ownerScope="instance" visibility="public" ordering="unordered" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="currentBattery" isSpecification="false"/>
+ <UML:Operation xmi.id="XDE-FB15292B-3905-4B1E-8769-29F1FAF6E8CA" concurrency="sequential" isRoot="false" isLeaf="false" isAbstract="false" isQuery="false" ownerScope="instance" visibility="public" specification="" name="ACK" isSpecification="false"/>
+ <UML:Operation xmi.id="XDE-A8F47A1B-9176-48C0-9560-8D5C9B6640B5" concurrency="sequential" isRoot="false" isLeaf="false" isAbstract="false" isQuery="false" ownerScope="instance" visibility="public" specification="" name="setDepth" isSpecification="false">
+ <UML:BehavioralFeature.parameter>
+ <UML:Parameter xmi.id="XDE-52EBAD3F-F627-4880-A096-68A455E57B49" kind="in" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="pointDepth" isSpecification="false"/>
+ </UML:BehavioralFeature.parameter>
+ </UML:Operation>
+ <UML:Operation xmi.id="XDE-CE55BE32-A8E3-46DA-8F60-F1977A8CEC98" concurrency="sequential" isRoot="false" isLeaf="false" isAbstract="false" isQuery="false" ownerScope="instance" visibility="public" specification="" name="setUpstreamDepth" isSpecification="false">
+ <UML:BehavioralFeature.parameter>
+ <UML:Parameter xmi.id="XDE-D6931B25-B8BA-4DFC-A2E0-D1EAB2F6FC2D" kind="in" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="upDepth" isSpecification="false"/>
+ </UML:BehavioralFeature.parameter>
+ </UML:Operation>
+ <UML:Operation xmi.id="XDE-267808B8-8377-4F2A-B169-3D7660ADD557" concurrency="sequential" isRoot="false" isLeaf="false" isAbstract="false" isQuery="false" ownerScope="instance" visibility="public" specification="" name="setUpstreamSpeed" isSpecification="false">
+ <UML:BehavioralFeature.parameter>
+ <UML:Parameter xmi.id="XDE-E19141AE-E98F-4E70-BD9D-05AA9B3B550C" kind="in" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="upSpeed" isSpecification="false"/>
+ </UML:BehavioralFeature.parameter>
+ </UML:Operation>
+ <UML:Operation xmi.id="XDE-02BF382B-C792-438C-A58D-CBC7A013EDCF" concurrency="sequential" isRoot="false" isLeaf="false" isAbstract="false" isQuery="false" ownerScope="instance" visibility="public" specification="" name="setPrediction" isSpecification="false">
+ <UML:BehavioralFeature.parameter>
+ <UML:Parameter xmi.id="XDE-8EDCC2A4-A5FA-4025-B009-197E15E9AADE" kind="in" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="predict" isSpecification="false"/>
+ </UML:BehavioralFeature.parameter>
+ </UML:Operation>
+ <UML:Operation xmi.id="XDE-4AE289D2-E012-4D8F-971A-16DF0C7C1087" concurrency="sequential" isRoot="false" isLeaf="false" isAbstract="false" isQuery="false" ownerScope="instance" visibility="public" specification="" name="setSpeed" isSpecification="false">
+ <UML:BehavioralFeature.parameter>
+ <UML:Parameter xmi.id="XDE-67D9B3E4-036C-4C64-9C00-0F00BAAF8C89" kind="in" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="pointSpeed" isSpecification="false"/>
+ </UML:BehavioralFeature.parameter>
+ </UML:Operation>
+ </UML:Classifier.feature>
+ <UML:Namespace.ownedElement>
+ <UML:Association xmi.id="XDE-FAE8420F-C293-4206-B477-95B6CFE7D46D" name="" isSpecification="false">
+ <UML:Association.connection>
+ <UML:AssociationEnd xmi.id="XDE-8BAA49C9-92EE-4659-82F6-63F86993B09C" aggregation="composite" isNavigable="true" participant="XDE-34A1A642-BEFC-4C29-94E0-E54E0847E936" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="_PressureSensor" isSpecification="false">
+ <UML:AssociationEnd.multiplicity>
+ <UML:Multiplicity>
+ <UML:Multiplicity.range>
+ <UML:MultiplicityRange lower="*" upper="*"/>
+ </UML:Multiplicity.range>
+ </UML:Multiplicity>
+ </UML:AssociationEnd.multiplicity>
+ </UML:AssociationEnd>
+ <UML:AssociationEnd xmi.id="XDE-AEEC671F-F492-4015-AD39-E4D687C38B40" aggregation="none" isNavigable="false" participant="XDE-D14BF0DA-20D5-43C6-8DE1-714E1B1AF389" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="" isSpecification="false"/>
+ </UML:Association.connection>
+ </UML:Association>
+ <UML:Association xmi.id="XDE-FE0ECB31-564B-4338-8791-13742270672B" name="" isSpecification="false">
+ <UML:Association.connection>
+ <UML:AssociationEnd xmi.id="XDE-154CE159-60FC-48B7-B8BD-F0969C23C8FF" aggregation="composite" isNavigable="true" participant="XDE-9F5BCF4C-50EA-41A0-A2CE-88F337C50512" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="_DigiCamSensor" isSpecification="false">
+ <UML:AssociationEnd.multiplicity>
+ <UML:Multiplicity>
+ <UML:Multiplicity.range>
+ <UML:MultiplicityRange lower="*" upper="*"/>
+ </UML:Multiplicity.range>
+ </UML:Multiplicity>
+ </UML:AssociationEnd.multiplicity>
+ </UML:AssociationEnd>
+ <UML:AssociationEnd xmi.id="XDE-556BBE7D-35A9-4FB2-B615-EAB66C312BC0" aggregation="none" isNavigable="false" participant="XDE-D14BF0DA-20D5-43C6-8DE1-714E1B1AF389" changeability="changeable" targetScope="instance" visibility="private" ordering="unordered" name="" isSpecification="false"/>
+ </UML:Association.connection>
+ </UML:Association>
+ <UML:StateMachine xmi.id="XDE-8CFD055B-2B13-4F09-A024-A56BAC76F381" name="StateMachine1" isSpecification="false">
+ <UML:StateMachine.top>
+ <UML:CompositeState xmi.id="XDE-6AC4325F-3D7A-4CF6-88BE-70FF2441E501" isConcurrent="false" name="TOP" isSpecification="false">
+ <UML:CompositeState.subvertex>
+=END========================
+=XMI-END====================
+<UML:Class xmi.id="XDE-34A1A642-BEFC-4C29-94E0-E54E0847E936" isActive="false" isAbstract="false" isLeaf="false" isRoot="false" visibility="public" name="PressureSensor" isSpecification="false">
+ <UML:Classifier.feature>
+ <UML:Attribute xmi.id="XDE-191074A0-C17E-48E3-A0D3-6DECB0B63434" changeability="changeable" targetScope="instance" ownerScope="instance" visibility="public" ordering="unordered" type="XDE-96846635-54E5-41FC-A6BF-776DF2241664" name="depth" isSpecification="false"/>
+ <UML:Operation xmi.id="XDE-CBD32837-2782-403F-AEE8-11E44AFB5F74" concurrency="sequential" isRoot="false" isLeaf="false" isAbstract="false" isQuery="false" ownerScope="instance" visibility="public" specification="" name="getDepth" isSpecification="false"/>
+ </UML:Classifier.feature>
+ <UML:Namespace.ownedElement>
+ <UML:StateMachine xmi.id="XDE-323E02F2-3693-4724-B5A5-46C2FE82BB39" name="StateMachine1" isSpecification="false">
+ <UML:StateMachine.top>
+ <UML:CompositeState xmi.id="XDE-A02811AA-2EF1-4695-A84B-4F66C0238485" isConcurrent="false" name="TOP" isSpecification="false">
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+ <UML:ActionExpression language="" body="^Node.setSpeed(speed)"/>
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+ <UML:Action.script>
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+ <UML:Action.script>
+ <UML:ActionExpression language="" body="^Node.setUpstreamSpeed(speed)"/>
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+ <UML:Action.script>
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+ <UML:Action.script>
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+ <UML:ModelElement.namespace>
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+ <UML:CallEvent xmi.id="XDE-D8EB5097-4BF5-4FCD-B38F-2143F04EFEEB" operation="XDE-37AFABB6-61A2-4FCB-BA1A-16F6BCC46E4D" name="sendPredictionUsingWiFi" isSpecification="false"/>
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+ <UML:TaggedValue.modelElement>
+ <UML:ModelElement xmi.idref="XDE-9F5BCF4C-50EA-41A0-A2CE-88F337C50512"/>
+ </UML:TaggedValue.modelElement>
+ </UML:TaggedValue>
+ <UML:TaggedValue xmi.id="XDE-674757FA-7489-4B39-AFEE-1024522032FD" name="persistence">
+ <UML:TaggedValue.dataValue>persistent</UML:TaggedValue.dataValue>
+ <UML:TaggedValue.modelElement>
+ <UML:ModelElement xmi.idref="XDE-700459B0-46F7-4747-90DE-044FEC13B4E7"/>
+ </UML:TaggedValue.modelElement>
+ </UML:TaggedValue>
+ </XMI.content>
+</XMI>
+=END========================
Added: branches/uml-merge/tests/_orchid-avida-mde/test_list
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/test_list (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/test_list 2008-06-26 17:09:41 UTC (rev 2689)
@@ -0,0 +1,37 @@
+;--- Begin Test Configuration File (test_list) ---
+[main]
+; Command line arguments to pass to the application
+args =
+
+app = %(default_app)s ; Application path to test
+nonzeroexit = disallow ; Exit code handling (disallow, allow, or require)
+ ; disallow - treat non-zero exit codes as failures
+ ; allow - all exit codes are acceptable
+ ; require - treat zero exit codes as failures, useful
+ ; for creating tests for app error checking
+createdby = Heather Goldsby ; Who created the test
+email = hjg at msu.edu ; Email address for the test's creator
+
+[consistency]
+enabled = yes ; Is this test a consistency test?
+long = no ; Is this test a long test?
+
+[performance]
+enabled = no ; Is this test a performance test?
+long = no ; Is this test a long test?
+
+; The following variables can be used in constructing setting values by calling
+; them with %(variable_name)s. For example see 'app' above.
+;
+; builddir
+; cpus
+; default_app
+; mode
+; perf_repeat
+; perf_user_margin
+; perf_wall_margin
+; svn
+; svnmetadir
+; svnversion
+; testdir
+;--- End Test Configuration File ---
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