[Avida-SVN] r2694 - in branches/uml-merge/tests/_orchid-avida-mde: . config expected expected/data
hjg at myxo.css.msu.edu
hjg at myxo.css.msu.edu
Tue Jul 1 07:19:42 PDT 2008
Author: hjg
Date: 2008-07-01 10:19:42 -0400 (Tue, 01 Jul 2008)
New Revision: 2694
Added:
branches/uml-merge/tests/_orchid-avida-mde/expected/
branches/uml-merge/tests/_orchid-avida-mde/expected/data/
branches/uml-merge/tests/_orchid-avida-mde/expected/data/average.dat
branches/uml-merge/tests/_orchid-avida-mde/expected/data/count.dat
branches/uml-merge/tests/_orchid-avida-mde/expected/data/dominant.dat
branches/uml-merge/tests/_orchid-avida-mde/expected/data/resource.dat
branches/uml-merge/tests/_orchid-avida-mde/expected/data/stats.dat
branches/uml-merge/tests/_orchid-avida-mde/expected/data/tasks.dat
branches/uml-merge/tests/_orchid-avida-mde/expected/data/time.dat
branches/uml-merge/tests/_orchid-avida-mde/expected/data/uml.dat
Removed:
branches/uml-merge/tests/_orchid-avida-mde/config/hydraulic.jar
Log:
added expected results for _orchid-avida-mde test
Deleted: branches/uml-merge/tests/_orchid-avida-mde/config/hydraulic.jar
===================================================================
(Binary files differ)
Added: branches/uml-merge/tests/_orchid-avida-mde/expected/data/average.dat
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/expected/data/average.dat (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/expected/data/average.dat 2008-07-01 14:19:42 UTC (rev 2694)
@@ -0,0 +1,20 @@
+# Avida Average Data
+# Tue Jul 1 10:16:22 2008
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 61440.000000 29.000000 2118.620690 0.000000 30.000000 30.000000 30.000000 1.000000 2.000000 2.000000 0.000000 1.000000 -0.099160 0.000000 0.000000
Added: branches/uml-merge/tests/_orchid-avida-mde/expected/data/count.dat
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/expected/data/count.dat (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/expected/data/count.dat 2008-07-01 14:19:42 UTC (rev 2694)
@@ -0,0 +1,20 @@
+# Avida count data
+# Tue Jul 1 10:16:22 2008
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 1 0 0 0 2 1 2 1 1 1 0 0
Added: branches/uml-merge/tests/_orchid-avida-mde/expected/data/dominant.dat
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/expected/data/dominant.dat (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/expected/data/dominant.dat 2008-07-01 14:19:42 UTC (rev 2694)
@@ -0,0 +1,20 @@
+# Avida Dominant Data
+# Tue Jul 1 10:16:22 2008
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 61440.000000 29.000000 2118.620690 0.034483 30 30.000000 30.000000 1 1 1 0 0 2118.620690 1 030-aaaaa
Added: branches/uml-merge/tests/_orchid-avida-mde/expected/data/resource.dat
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/expected/data/resource.dat (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/expected/data/resource.dat 2008-07-01 14:19:42 UTC (rev 2694)
@@ -0,0 +1,7 @@
+# Avida resource data
+# Tue Jul 1 10:16:22 2008
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+
+0
Added: branches/uml-merge/tests/_orchid-avida-mde/expected/data/stats.dat
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/expected/data/stats.dat (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/expected/data/stats.dat 2008-07-01 14:19:42 UTC (rev 2694)
@@ -0,0 +1,16 @@
+# Generic Statistics Data
+# Tue Jul 1 10:16:22 2008
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.000000 0.000000 -0.000000 -0.000000 1 0.000000 0.000000 0 0 0
Added: branches/uml-merge/tests/_orchid-avida-mde/expected/data/tasks.dat
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/expected/data/tasks.dat (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/expected/data/tasks.dat 2008-07-01 14:19:42 UTC (rev 2694)
@@ -0,0 +1,15 @@
+# Avida tasks data
+# Tue Jul 1 10:16:22 2008
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Successfully created scenarios
+# 3: Successfully ran hydra
+# 4: Successfully ran Spin witness trace
+# 5: Successfully ran Spin
+# 6: Successfully ran Spin witness trace
+# 7: Successfully ran Spin
+# 8: Minimizing edges
+
+0 1 0 0 0 0 0 0
+10 0 0 0 0 0 0 0
Added: branches/uml-merge/tests/_orchid-avida-mde/expected/data/time.dat
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/expected/data/time.dat (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/expected/data/time.dat 2008-07-01 14:19:42 UTC (rev 2694)
@@ -0,0 +1,8 @@
+# Avida time data
+# Tue Jul 1 10:16:22 2008
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 1.000000 30
Added: branches/uml-merge/tests/_orchid-avida-mde/expected/data/uml.dat
===================================================================
--- branches/uml-merge/tests/_orchid-avida-mde/expected/data/uml.dat (rev 0)
+++ branches/uml-merge/tests/_orchid-avida-mde/expected/data/uml.dat 2008-07-01 14:19:42 UTC (rev 2694)
@@ -0,0 +1,42 @@
+# Avida uml data
+
+# the average number of transitions and states per organism
+# Tue Jul 1 10:16:22 2008
+# 1: update
+# 2: av num states
+# 3: av num trans
+# 4: total number of hydra attempts
+# 5: total number of hydra passes
+# 6: total number of spin W1 attempts
+# 7: total number of spin W1 passes
+# 8: total number of spin W2 attempts
+# 9: total number of spin W2 passes
+# 10: total number of spin N1 attempts
+# 11: total number of spin N1 passes
+# 12: total number of spin N2 attempts
+# 13: total number of spin N2 passes
+# 14: total number of spin N1 & N2 passes
+# 15: Average ratio of scenario completion (+looping,start-state)
+# 16: Average ratio of scenario completion (+looping,start-state)
+# 17: Average ratio of scenario completion (+looping,start-state)
+# 18: Average ratio of scenario completion (+looping,start-state)
+# 19: Average ratio of scenario completion (+looping,start-state)
+# 20: Average ratio of scenario completion (+looping,start-state)
+# 21: Average ratio of scenario completion (+looping,start-state)
+# 22: Average ratio of scenario completion (+looping,start-state)
+# 23: Average ratio of scenario completion (+looping,start-state)
+# 24: Average ratio of scenario completion (+looping,start-state)
+# 25: Average ratio of scenario completion (+looping,start-state)
+# 26: Average ratio of scenario completion (+looping,start-state)
+
+0 13.000000 13.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.666667 1.000000 1.000000 1.000000 1.000000 1.000000 0.500000 0.500000 0.500000 0.500000 0.500000
+1 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
+2 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
+3 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
+4 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
+5 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
+6 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
+7 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
+8 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
+9 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
+10 13 13 1 0 0 0 0 0 0 0 0 0 0 0.666667 0.666667 1 1 1 1 1 0.5 0.5 0.5 0.5 0.5
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