[Avida-SVN] r3030 - in development/tests/green_beard_instructions: . expected expected/data expected/data/archive
brysonda at myxo.css.msu.edu
brysonda at myxo.css.msu.edu
Fri Dec 12 14:25:33 PST 2008
Author: brysonda
Date: 2008-12-12 17:25:32 -0500 (Fri, 12 Dec 2008)
New Revision: 3030
Added:
development/tests/green_beard_instructions/expected/
development/tests/green_beard_instructions/expected/data/
development/tests/green_beard_instructions/expected/data/archive/
development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org
development/tests/green_beard_instructions/expected/data/archive/100-aaabe.org
development/tests/green_beard_instructions/expected/data/average.dat
development/tests/green_beard_instructions/expected/data/count.dat
development/tests/green_beard_instructions/expected/data/dominant.dat
development/tests/green_beard_instructions/expected/data/donations.dat
development/tests/green_beard_instructions/expected/data/instruction.dat
development/tests/green_beard_instructions/expected/data/resource.dat
development/tests/green_beard_instructions/expected/data/stats.dat
development/tests/green_beard_instructions/expected/data/tasks.dat
development/tests/green_beard_instructions/expected/data/time.dat
Log:
Add new green_beard_instructions expected results.
Added: development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org
===================================================================
--- development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org (rev 0)
+++ development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,134 @@
+# Fri Dec 12 17:25:44 2008
+# Filename........: archive/100-aaaaa.org
+# Update Output...: 100
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: -1
+# Genotype ID.....: 1
+# Parent Gen ID...: -1
+# Tree Depth......: 0
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 97.000000
+# Gestation Time..: 389
+# Fitness.........: 0.249357
+# Errors..........: 0
+# Genome Size.....: 100
+# Copied Size.....: 100
+# Executed Size...: 97
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# not 0 (0.000000)
+# nand 0 (0.000000)
+# and 0 (0.000000)
+# orn 0 (0.000000)
+# or 0 (0.000000)
+# andn 0 (0.000000)
+# nor 0 (0.000000)
+# xor 0 (0.000000)
+# equ 0 (0.000000)
+
+
+h-alloc
+h-search
+nop-C
+nop-A
+mov-head
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+h-search
+h-copy
+if-label
+nop-C
+nop-A
+divide-sex
+mov-head
+nop-A
+nop-B
Added: development/tests/green_beard_instructions/expected/data/archive/100-aaabe.org
===================================================================
--- development/tests/green_beard_instructions/expected/data/archive/100-aaabe.org (rev 0)
+++ development/tests/green_beard_instructions/expected/data/archive/100-aaabe.org 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,134 @@
+# Fri Dec 12 17:25:44 2008
+# Filename........: archive/100-aaabe.org
+# Update Output...: 200
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 108
+# Genotype ID.....: 1488
+# Parent Gen ID...: 1244
+# Tree Depth......: 5
+# Parent Distance.: 2
+#
+# Generation: 0
+# Merit...........: 97.000000
+# Gestation Time..: 388
+# Fitness.........: 0.250000
+# Errors..........: 0
+# Genome Size.....: 100
+# Copied Size.....: 100
+# Executed Size...: 97
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# not 0 (0.000000)
+# nand 0 (0.000000)
+# and 0 (0.000000)
+# orn 0 (0.000000)
+# or 0 (0.000000)
+# andn 0 (0.000000)
+# nor 0 (0.000000)
+# xor 0 (0.000000)
+# equ 0 (0.000000)
+
+
+h-alloc
+h-search
+nop-C
+nop-A
+mov-head
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+donate-rnd
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+donate-kin
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+set-flow
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+h-search
+h-copy
+if-label
+nop-C
+nop-A
+divide-sex
+mov-head
+nop-A
+nop-B
Added: development/tests/green_beard_instructions/expected/data/average.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/average.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/average.dat 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,22 @@
+# Avida Average Data
+# Fri Dec 12 17:25:43 2008
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 97.000000 389.000000 0.000000 0.000000 100.000000 100.000000 97.000000 1.000000 401.000000 401.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+100 102.293 385.185 0.245758 0 101.253 99.4411 94.8672 1.14655 0.0300752 0.0100251 2.34085 7.20301 -0.103311 0 0
+200 117.416 391.713 0.241969 0 105.196 100.821 96.1134 1.05026 0.0403023 0.0100756 5.30479 15.1083 -0.932973 0 0
Added: development/tests/green_beard_instructions/expected/data/count.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/count.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/count.dat 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,22 @@
+# Avida count data
+# Fri Dec 12 17:25:43 2008
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 1 0 0 0 401 1 401 1 1 1 0 0
+100 11970 399 349 25 0 0 0 12 12 4 151 223 399 0 0
+200 11910 397 378 37 0 0 0 16 16 4 148 230 397 0 0
Added: development/tests/green_beard_instructions/expected/data/dominant.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/dominant.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/dominant.dat 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,22 @@
+# Avida Dominant Data
+# Fri Dec 12 17:25:43 2008
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 100 0.000000 0.000000 1 0 0 0 0 0.000000 1 100-aaaaa
+100 97 389 0.249357 0.00257069 100 99.9954 97 23 1 0 0 0 0.340351 1 100-aaaaa
+200 97 388 0.25 0.00257732 100 100 97 3 0 0 5 0 0.255072 1488 100-aaabe
Added: development/tests/green_beard_instructions/expected/data/donations.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/donations.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/donations.dat 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,21 @@
+# Info about organisms giving donations in the population
+# Fri Dec 12 17:25:44 2008
+# 1: update
+# 2: parent made at least one donation
+# 3: parent received at least one donation
+# 4: parent received at least one donation but did not make one
+# 5: parent made at least one edit_donation
+# 6: parent received at least one edit_donation
+# 7: parent received at least one edit_donation but did not make one
+# 8: parent made at least one kin_donation
+# 9: parent received at least one kin_donation
+# 10: parent received at least one kin_donation but did not make one
+# 11: parent made at least one threshgb_donation
+# 12: parent received at least one threshgb_donation
+# 13: parent received at least one threshgb_donation but did not make one
+# 14: parent made at least one quanta_threshgb_donation
+# 15: parent received at least one quanta_threshgb_donation
+# 16: parent received at least one quanta_threshgb_donation but did not make one
+
+100 102.000000 125.000000 51.000000 28.000000 52.000000 48.000000 22.000000 32.000000 20.000000 53.000000 42.000000 0.000000 0.000000 0.000000 0.000000
+200 231 245 62 58 75 45 102 92 22 110 83 1 0 0 0
Added: development/tests/green_beard_instructions/expected/data/instruction.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/instruction.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/instruction.dat 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,37 @@
+# Avida instruction execution data
+# Fri Dec 12 17:25:44 2008
+# 1: Update
+# 2: nop-A
+# 3: nop-B
+# 4: nop-C
+# 5: if-n-equ
+# 6: if-less
+# 7: pop
+# 8: push
+# 9: swap-stk
+# 10: swap
+# 11: shift-r
+# 12: shift-l
+# 13: inc
+# 14: dec
+# 15: add
+# 16: sub
+# 17: nand
+# 18: IO
+# 19: h-alloc
+# 20: divide-sex
+# 21: h-copy
+# 22: h-search
+# 23: mov-head
+# 24: jmp-head
+# 25: get-head
+# 26: if-label
+# 27: set-flow
+# 28: donate-threshgb
+# 29: donate-edt
+# 30: donate-kin
+# 31: donate-rnd
+# 32: nop-X
+
+100 462 25 32128 67 27 17 32 32 29 27 34 44 19 34 49 33 47 399 399 39443 836 39284 23 88 39193 19 56 28 23 16 40
+200 1806 43 29853 85 74 41 79 46 47 53 37 98 43 74 78 59 88 397 397 40008 881 39804 48 32 39967 51 133 62 113 35 71
Added: development/tests/green_beard_instructions/expected/data/resource.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/resource.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/resource.dat 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,9 @@
+# Avida resource data
+# Fri Dec 12 17:25:43 2008
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+
+0
+100
+200
Added: development/tests/green_beard_instructions/expected/data/stats.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/stats.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/stats.dat 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,18 @@
+# Generic Statistics Data
+# Fri Dec 12 17:25:43 2008
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.564404 0.564404 0.831040 0.831040 1 0.000000 0.000000 0 0 0
+100 0.0145396 0.568362 0.564404 0.840168 0.83104 1 5.70005 0 0 0 0
+200 0.0326517 0.580585 0.564404 0.868894 0.83104 -1 5.91627 0 1 0 0
Added: development/tests/green_beard_instructions/expected/data/tasks.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/tasks.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/tasks.dat 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,18 @@
+# Avida tasks data
+# Fri Dec 12 17:25:43 2008
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Not
+# 3: Nand
+# 4: And
+# 5: OrNot
+# 6: Or
+# 7: AndNot
+# 8: Nor
+# 9: Xor
+# 10: Equals
+
+0 0 0 0 0 0 0 0 0 0
+100 0 0 0 0 0 0 0 0 0
+200 0 0 0 0 0 0 0 0 0
Added: development/tests/green_beard_instructions/expected/data/time.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/time.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/time.dat 2008-12-12 22:25:32 UTC (rev 3030)
@@ -0,0 +1,10 @@
+# Avida time data
+# Fri Dec 12 17:25:43 2008
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 30
+100 0.999457 7.20301 11970
+200 1.91092 15.1083 11910
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