[Avida-SVN] r3027 - in development/tests/green_beard_instructions: . expected expected/data expected/data/archive
brysonda at myxo.css.msu.edu
brysonda at myxo.css.msu.edu
Fri Dec 12 13:42:06 PST 2008
Author: brysonda
Date: 2008-12-12 16:42:06 -0500 (Fri, 12 Dec 2008)
New Revision: 3027
Added:
development/tests/green_beard_instructions/expected/
development/tests/green_beard_instructions/expected/data/
development/tests/green_beard_instructions/expected/data/archive/
development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org
development/tests/green_beard_instructions/expected/data/archive/100-aaabg.org
development/tests/green_beard_instructions/expected/data/average.dat
development/tests/green_beard_instructions/expected/data/count.dat
development/tests/green_beard_instructions/expected/data/dominant.dat
development/tests/green_beard_instructions/expected/data/donations.dat
development/tests/green_beard_instructions/expected/data/instruction.dat
development/tests/green_beard_instructions/expected/data/resource.dat
development/tests/green_beard_instructions/expected/data/stats.dat
development/tests/green_beard_instructions/expected/data/tasks.dat
development/tests/green_beard_instructions/expected/data/time.dat
Log:
Add green_beard_instructions test expected results
Added: development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org
===================================================================
--- development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org (rev 0)
+++ development/tests/green_beard_instructions/expected/data/archive/100-aaaaa.org 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,134 @@
+# Fri Dec 12 16:41:50 2008
+# Filename........: archive/100-aaaaa.org
+# Update Output...: 100
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: -1
+# Genotype ID.....: 1
+# Parent Gen ID...: -1
+# Tree Depth......: 0
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 97.000000
+# Gestation Time..: 389
+# Fitness.........: 0.249357
+# Errors..........: 0
+# Genome Size.....: 100
+# Copied Size.....: 100
+# Executed Size...: 97
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# not 0 (0.000000)
+# nand 0 (0.000000)
+# and 0 (0.000000)
+# orn 0 (0.000000)
+# or 0 (0.000000)
+# andn 0 (0.000000)
+# nor 0 (0.000000)
+# xor 0 (0.000000)
+# equ 0 (0.000000)
+
+
+h-alloc
+h-search
+nop-C
+nop-A
+mov-head
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+h-search
+h-copy
+if-label
+nop-C
+nop-A
+divide-sex
+mov-head
+nop-A
+nop-B
Added: development/tests/green_beard_instructions/expected/data/archive/100-aaabg.org
===================================================================
--- development/tests/green_beard_instructions/expected/data/archive/100-aaabg.org (rev 0)
+++ development/tests/green_beard_instructions/expected/data/archive/100-aaabg.org 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,134 @@
+# Fri Dec 12 16:41:52 2008
+# Filename........: archive/100-aaabg.org
+# Update Output...: 200
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 77
+# Genotype ID.....: 933
+# Parent Gen ID...: 717
+# Tree Depth......: 3
+# Parent Distance.: 2
+#
+# Generation: 0
+# Merit...........: 97.000000
+# Gestation Time..: 382
+# Fitness.........: 0.253927
+# Errors..........: 0
+# Genome Size.....: 100
+# Copied Size.....: 100
+# Executed Size...: 97
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# not 0 (0.000000)
+# nand 0 (0.000000)
+# and 0 (0.000000)
+# orn 0 (0.000000)
+# or 0 (0.000000)
+# andn 0 (0.000000)
+# nor 0 (0.000000)
+# xor 0 (0.000000)
+# equ 0 (0.000000)
+
+
+h-alloc
+h-search
+nop-C
+nop-A
+mov-head
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+shift-l
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+donate-threshgb
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+sub
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+if-n-equ
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+h-copy
+nop-C
+nop-C
+nop-C
+sub
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+nop-C
+h-search
+h-copy
+if-label
+nop-C
+nop-A
+divide-sex
+mov-head
+nop-A
+nop-B
Added: development/tests/green_beard_instructions/expected/data/average.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/average.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/average.dat 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,22 @@
+# Avida Average Data
+# Fri Dec 12 16:41:50 2008
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 97.000000 389.000000 0.000000 0.000000 100.000000 100.000000 97.000000 1.000000 401.000000 401.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+100 98.3941 384.489 0.244902 0 100.386 98.9148 94.5238 1.17699 0.0250627 0.0100251 2.32581 7.2381 -0.220982 0 0
+200 104.623 385.303 0.245159 0 101.278 99.4486 94.4035 1.0445 0.0350877 0.0250627 5.14286 15.1729 0.694273 0 0
Added: development/tests/green_beard_instructions/expected/data/count.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/count.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/count.dat 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,22 @@
+# Avida count data
+# Fri Dec 12 16:41:50 2008
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 1 0 0 0 401 1 401 1 1 1 0 0
+100 11970 399 339 20 0 0 0 10 10 4 161 226 399 0 0
+200 11970 399 382 29 0 0 0 14 14 10 172 222 399 0 0
Added: development/tests/green_beard_instructions/expected/data/dominant.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/dominant.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/dominant.dat 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,22 @@
+# Avida Dominant Data
+# Fri Dec 12 16:41:50 2008
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 100 0.000000 0.000000 1 0 0 0 0 0.000000 1 100-aaaaa
+100 97 389 0.249357 0.00257069 100 100.012 97 26 4 0 0 0 0.255937 1 100-aaaaa
+200 97 382 0.253927 0.0026178 100 100 97 3 0 0 3 0 0.340206 933 100-aaabg
Added: development/tests/green_beard_instructions/expected/data/donations.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/donations.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/donations.dat 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,21 @@
+# Info about organisms giving donations in the population
+# Fri Dec 12 16:41:50 2008
+# 1: update
+# 2: parent made at least one donation
+# 3: parent received at least one donation
+# 4: parent received at least one donation but did not make one
+# 5: parent made at least one edit_donation
+# 6: parent received at least one edit_donation
+# 7: parent received at least one edit_donation but did not make one
+# 8: parent made at least one kin_donation
+# 9: parent received at least one kin_donation
+# 10: parent received at least one kin_donation but did not make one
+# 11: parent made at least one threshgb_donation
+# 12: parent received at least one threshgb_donation
+# 13: parent received at least one threshgb_donation but did not make one
+# 14: parent made at least one quanta_threshgb_donation
+# 15: parent received at least one quanta_threshgb_donation
+# 16: parent received at least one quanta_threshgb_donation but did not make one
+
+100 94.000000 124.000000 71.000000 39.000000 49.000000 37.000000 17.000000 31.000000 21.000000 43.000000 21.000000 0.000000 0.000000 0.000000 0.000000
+200 160 113 43 39 30 25 39 36 22 89 36 0 0 0 0
Added: development/tests/green_beard_instructions/expected/data/instruction.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/instruction.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/instruction.dat 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,37 @@
+# Avida instruction execution data
+# Fri Dec 12 16:41:50 2008
+# 1: Update
+# 2: nop-A
+# 3: nop-B
+# 4: nop-C
+# 5: if-n-equ
+# 6: if-less
+# 7: pop
+# 8: push
+# 9: swap-stk
+# 10: swap
+# 11: shift-r
+# 12: shift-l
+# 13: inc
+# 14: dec
+# 15: add
+# 16: sub
+# 17: nand
+# 18: IO
+# 19: h-alloc
+# 20: divide-sex
+# 21: h-copy
+# 22: h-search
+# 23: mov-head
+# 24: jmp-head
+# 25: get-head
+# 26: if-label
+# 27: set-flow
+# 28: donate-threshgb
+# 29: donate-edt
+# 30: donate-kin
+# 31: donate-rnd
+# 32: nop-X
+
+100 452 129 32373 34 19 21 28 32 17 30 26 34 21 15 54 25 28 399 399 39254 824 39224 22 31 39030 17 43 39 17 12 22
+200 920 81 31140 66 35 73 51 48 55 163 63 59 66 43 89 72 75 399 399 39689 895 39164 99 73 38827 36 192 39 39 22 57
Added: development/tests/green_beard_instructions/expected/data/resource.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/resource.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/resource.dat 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,9 @@
+# Avida resource data
+# Fri Dec 12 16:41:50 2008
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+
+0
+100
+200
Added: development/tests/green_beard_instructions/expected/data/stats.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/stats.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/stats.dat 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,18 @@
+# Generic Statistics Data
+# Fri Dec 12 16:41:50 2008
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.564404 0.564404 0.831040 0.831040 1 0.000000 0.000000 0 0 0
+100 0.0180287 0.565627 0.564404 0.833851 0.83104 2 5.64222 0 0 0 0
+200 0.0351381 0.568441 0.564404 0.840351 0.83104 -1 5.92727 0 3 0 0
Added: development/tests/green_beard_instructions/expected/data/tasks.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/tasks.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/tasks.dat 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,18 @@
+# Avida tasks data
+# Fri Dec 12 16:41:50 2008
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Not
+# 3: Nand
+# 4: And
+# 5: OrNot
+# 6: Or
+# 7: AndNot
+# 8: Nor
+# 9: Xor
+# 10: Equals
+
+0 0 0 0 0 0 0 0 0 0
+100 0 0 0 0 0 0 0 0 0
+200 0 0 0 0 0 0 0 0 0
Added: development/tests/green_beard_instructions/expected/data/time.dat
===================================================================
--- development/tests/green_beard_instructions/expected/data/time.dat (rev 0)
+++ development/tests/green_beard_instructions/expected/data/time.dat 2008-12-12 21:42:06 UTC (rev 3027)
@@ -0,0 +1,10 @@
+# Avida time data
+# Fri Dec 12 16:41:50 2008
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 30
+100 1.01315 7.2381 11970
+200 2.00662 15.1729 11970
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