[Avida-SVN] r1593 - in development/tests/avida_GA_lim_res: . expected expected/data expected/data/archive
goingssh at myxo.css.msu.edu
goingssh at myxo.css.msu.edu
Tue May 22 12:14:04 PDT 2007
Author: goingssh
Date: 2007-05-22 15:14:04 -0400 (Tue, 22 May 2007)
New Revision: 1593
Added:
development/tests/avida_GA_lim_res/expected/
development/tests/avida_GA_lim_res/expected/data/
development/tests/avida_GA_lim_res/expected/data/archive/
development/tests/avida_GA_lim_res/expected/data/archive/041-aaaab.org
development/tests/avida_GA_lim_res/expected/data/archive/041-aaaaf.org
development/tests/avida_GA_lim_res/expected/data/archive/041-aaaav.org
development/tests/avida_GA_lim_res/expected/data/archive/041-aaabg.org
development/tests/avida_GA_lim_res/expected/data/archive/041-aaaby.org
development/tests/avida_GA_lim_res/expected/data/archive/041-aaacx.org
development/tests/avida_GA_lim_res/expected/data/archive/041-aaada.org
development/tests/avida_GA_lim_res/expected/data/average.dat
development/tests/avida_GA_lim_res/expected/data/count.dat
development/tests/avida_GA_lim_res/expected/data/detail-100.pop
development/tests/avida_GA_lim_res/expected/data/dominant.dat
development/tests/avida_GA_lim_res/expected/data/historic-100.pop
development/tests/avida_GA_lim_res/expected/data/resource.dat
development/tests/avida_GA_lim_res/expected/data/stats.dat
development/tests/avida_GA_lim_res/expected/data/tasks.dat
development/tests/avida_GA_lim_res/expected/data/tasks_exe.dat
development/tests/avida_GA_lim_res/expected/data/tasks_quality.dat
development/tests/avida_GA_lim_res/expected/data/time.dat
Log:
Finally for real committing expected results of test, I think
Added: development/tests/avida_GA_lim_res/expected/data/archive/041-aaaab.org
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/archive/041-aaaab.org (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/archive/041-aaaab.org 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,72 @@
+# Tue May 22 15:15:16 2007
+# Filename........: archive/041-aaaab.org
+# Update Output...: 0
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: -1
+# Genotype ID.....: 196
+# Parent Gen ID...: -1
+# Tree Depth......: 0
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 41
+# Fitness.........: 2.439024
+# Errors..........: 0
+# Genome Size.....: 41
+# Copied Size.....: 41
+# Executed Size...: 41
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.244152)
+# optimize 1 (0.364523)
+# optimize 1 (0.794682)
+# optimize 1 (0.592051)
+# optimize 1 (0.677383)
+# optimize 1 (0.373957)
+
+
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+repro
Added: development/tests/avida_GA_lim_res/expected/data/archive/041-aaaaf.org
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/archive/041-aaaaf.org (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/archive/041-aaaaf.org 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,72 @@
+# Tue May 22 15:15:16 2007
+# Filename........: archive/041-aaaaf.org
+# Update Output...: 20
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: -1
+# Genotype ID.....: 25
+# Parent Gen ID...: -1
+# Tree Depth......: 0
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 41
+# Fitness.........: 2.439024
+# Errors..........: 0
+# Genome Size.....: 41
+# Copied Size.....: 41
+# Executed Size...: 41
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.470052)
+# optimize 1 (0.434380)
+# optimize 1 (0.758002)
+# optimize 1 (0.818505)
+# optimize 1 (0.731283)
+# optimize 1 (0.538284)
+
+
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+repro
Added: development/tests/avida_GA_lim_res/expected/data/archive/041-aaaav.org
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/archive/041-aaaav.org (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/archive/041-aaaav.org 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,72 @@
+# Tue May 22 15:15:16 2007
+# Filename........: archive/041-aaaav.org
+# Update Output...: 40
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 8
+# Genotype ID.....: 264
+# Parent Gen ID...: 258
+# Tree Depth......: 2
+# Parent Distance.: 1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 41
+# Fitness.........: 2.439024
+# Errors..........: 0
+# Genome Size.....: 41
+# Copied Size.....: 41
+# Executed Size...: 41
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.495608)
+# optimize 1 (0.459936)
+# optimize 1 (0.763902)
+# optimize 1 (0.824405)
+# optimize 1 (0.751057)
+# optimize 1 (0.538284)
+
+
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+repro
Added: development/tests/avida_GA_lim_res/expected/data/archive/041-aaabg.org
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/archive/041-aaabg.org (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/archive/041-aaabg.org 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,72 @@
+# Tue May 22 15:15:16 2007
+# Filename........: archive/041-aaabg.org
+# Update Output...: 50
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 14
+# Genotype ID.....: 300
+# Parent Gen ID...: 295
+# Tree Depth......: 3
+# Parent Distance.: 1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 41
+# Fitness.........: 2.439024
+# Errors..........: 0
+# Genome Size.....: 41
+# Copied Size.....: 41
+# Executed Size...: 41
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.502703)
+# optimize 1 (0.470323)
+# optimize 1 (0.768379)
+# optimize 1 (0.823304)
+# optimize 1 (0.751942)
+# optimize 1 (0.534801)
+
+
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+repro
Added: development/tests/avida_GA_lim_res/expected/data/archive/041-aaaby.org
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/archive/041-aaaby.org (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/archive/041-aaaby.org 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,72 @@
+# Tue May 22 15:15:17 2007
+# Filename........: archive/041-aaaby.org
+# Update Output...: 80
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 36
+# Genotype ID.....: 411
+# Parent Gen ID...: 300
+# Tree Depth......: 4
+# Parent Distance.: 1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 41
+# Fitness.........: 2.439024
+# Errors..........: 0
+# Genome Size.....: 41
+# Copied Size.....: 41
+# Executed Size...: 41
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.510996)
+# optimize 1 (0.462711)
+# optimize 1 (0.753768)
+# optimize 1 (0.835613)
+# optimize 1 (0.761270)
+# optimize 1 (0.551612)
+
+
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+repro
Added: development/tests/avida_GA_lim_res/expected/data/archive/041-aaacx.org
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/archive/041-aaacx.org (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/archive/041-aaacx.org 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,72 @@
+# Tue May 22 15:15:17 2007
+# Filename........: archive/041-aaacx.org
+# Update Output...: 100
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 58
+# Genotype ID.....: 530
+# Parent Gen ID...: 411
+# Tree Depth......: 5
+# Parent Distance.: 1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 41
+# Fitness.........: 2.439024
+# Errors..........: 0
+# Genome Size.....: 41
+# Copied Size.....: 41
+# Executed Size...: 41
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.523315)
+# optimize 1 (0.475031)
+# optimize 1 (0.755381)
+# optimize 1 (0.837227)
+# optimize 1 (0.770709)
+# optimize 1 (0.551612)
+
+
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+repro
Added: development/tests/avida_GA_lim_res/expected/data/archive/041-aaada.org
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/archive/041-aaada.org (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/archive/041-aaada.org 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,72 @@
+# Tue May 22 15:15:17 2007
+# Filename........: archive/041-aaada.org
+# Update Output...: 90
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 61
+# Genotype ID.....: 548
+# Parent Gen ID...: 300
+# Tree Depth......: 4
+# Parent Distance.: 1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 41
+# Fitness.........: 2.439024
+# Errors..........: 0
+# Genome Size.....: 41
+# Copied Size.....: 41
+# Executed Size...: 41
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.515022)
+# optimize 1 (0.482642)
+# optimize 1 (0.769992)
+# optimize 1 (0.824918)
+# optimize 1 (0.761299)
+# optimize 1 (0.534801)
+
+
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add1
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add1
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+IObuf-add0
+repro
Added: development/tests/avida_GA_lim_res/expected/data/average.dat
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/average.dat (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/average.dat 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,30 @@
+# Avida Average Data
+# Tue May 22 15:15:16 2007
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 175.290126 41.000000 1.933906 0.000000 41.000000 41.000000 41.000000 1.018100 1.026667 1.022222 0.004444 0.048889 -0.011256 0.000000 0.000000
+10 2.55253e+12 41 6.22568e+10 0 41 41 41 4.09091 0.413333 0.377778 0.368889 18.6222 2.04474 0 0
+20 1.89556e+15 41 4.62331e+13 0 41 41 41 8.03571 0.537778 0.502222 1.49333 34.7289 2.19409 0 0
+30 1.29721e+16 41 3.16392e+14 0 41 41 41 6.81818 0.502222 0.488889 2.57333 48.1822 3.18912 0 0
+40 1.51321e+16 41 3.69076e+14 0 41 41 41 7.5 0.604444 0.577778 3.33778 58.9289 3.3324 0 0
+50 1.08324e+16 41 2.64206e+14 0 41 41 41 6.81818 0.52 0.48 3.75556 66.6933 3.27454 0 0
+60 1.22502e+16 41 2.98785e+14 0 41 41 41 7.5 0.488889 0.457778 3.97333 74.56 3.09416 0 0
+70 1.52152e+16 41 3.71102e+14 0 41 41 41 6.81818 0.484444 0.453333 4.21333 82.3333 2.15738 0 0
+80 9.21905e+15 41 2.24855e+14 0 41 41 41 7.25806 0.555556 0.52 4.40444 90.4178 3.26297 0 0
+90 7.85871e+15 41 1.91676e+14 0 41 41 41 6.61765 0.444444 0.422222 4.89778 99.8622 2.46465 0 0
+100 1.2619e+16 41 3.0778e+14 0 41 41 41 6.61765 0.417778 0.395556 5.25778 110.427 4.59199 0 0
Added: development/tests/avida_GA_lim_res/expected/data/count.dat
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/count.dat (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/count.dat 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,30 @@
+# Avida count data
+# Tue May 22 15:15:16 2007
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 6750 225 221 2 0 0 0 231 6 230 224 220 225 0 0
+10 6750 225 55 20 0 0 0 93 93 85 213 132 225 0 0
+20 6750 225 28 17 0 0 0 121 121 113 213 122 225 0 0
+30 6750 225 33 21 0 0 0 113 113 110 218 120 225 0 0
+40 6750 225 30 25 0 0 0 136 136 130 212 117 225 0 0
+50 6750 225 33 25 0 0 0 117 117 108 209 117 225 0 0
+60 6750 225 30 20 0 0 0 110 110 103 209 123 225 0 0
+70 6750 225 33 27 0 0 0 109 109 102 211 124 225 0 0
+80 6750 225 31 31 0 0 0 125 125 117 215 117 225 0 0
+90 6750 225 34 29 0 0 0 100 100 95 215 121 225 0 0
+100 6750 225 34 28 0 0 0 94 94 89 217 126 225 0 0
Added: development/tests/avida_GA_lim_res/expected/data/detail-100.pop
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/detail-100.pop (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/detail-100.pop 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,51 @@
+#filetype genotype_data
+#format id parent_id parent_dist num_cpus total_cpus length merit gest_time fitness update_born update_dead depth sequence
+
+# 1: ID
+# 2: parent ID
+# 3: parent distance
+# 4: number of orgranisms currently alive
+# 5: total number of organisms that ever existed
+# 6: length of genome
+# 7: merit
+# 8: gestation time
+# 9: fitness
+# 10: update born
+# 11: update deactivated
+# 12: depth in phylogentic tree
+# 13: genome of organism
+
+530 411 1 35 386 41 1.79447e+16 41 4.37677e+14 58 -1 5 ababbbbabababbbabbaaabbbabaaaaababaaaaaac
+548 300 1 25 470 41 1.44725e+16 41 3.52988e+14 61 -1 4 ababbbbabbbabbbabbaaabbbabaaaaababaaaaaac
+584 411 1 23 279 41 1.89747e+16 41 4.62797e+14 68 -1 5 ababbbbabababbbabbaaabbbabaaaaabbaaaaaaac
+643 637 1 16 195 41 1.72216e+16 41 4.2004e+14 78 -1 7 aaaabbbabababbbabbaaabbbabaaaaabbaaaaaaac
+663 548 1 12 62 41 1.24445e+16 41 3.03524e+14 81 -1 5 ababbbbabbbabbbabbaaaabbabaaaaababaaaaaac
+709 584 1 10 38 41 1.45042e+16 41 3.53762e+14 88 -1 6 ababbbbabababbbabbaaabbbabaaababbaaaaaaac
+573 300 1 10 101 41 1.20358e+16 41 2.93557e+14 65 -1 4 ababbbbabbaabbbabbaaabbbabaaaaabbbaaaaaac
+572 300 1 9 240 41 1.56443e+16 41 3.81568e+14 65 -1 4 ababbbbabbbabbbabbaaabbbabaaaaabbaaaaaaac
+691 530 1 8 48 41 1.594e+16 41 3.88781e+14 85 -1 6 abbbbbbabababbbabbaaabbbabaaaaababaaaaaac
+730 584 1 7 13 41 1.41875e+16 41 3.46036e+14 93 -1 6 ababbbbabababbbabbaaabbbabaabaabbaaaaaaac
+320 300 1 7 780 41 1.73076e+16 41 4.22135e+14 20 -1 4 ababbababbbabbbabbaaabbbabaaaaabbbaaaaaac
+563 411 1 7 150 41 1.35914e+16 41 3.31497e+14 64 -1 5 ababbbbabababbbabbaaabbaabaaaaabbbaaaaaac
+681 585 1 7 71 41 1.56907e+16 41 3.82701e+14 83 -1 6 ababbbaabbbabbbabbaabbbbabaaaaabbaaaaaaac
+714 663 1 7 37 41 1.68979e+16 41 4.12144e+14 89 -1 6 ababbbbabbaabbbabbaaaabbabaaaaababaaaaaac
+705 572 1 7 34 41 1.60782e+16 41 3.92151e+14 87 -1 5 ababbbaabbbabbbabbaaabbbabaaaaabbaaaaaaac
+661 530 1 4 45 41 1.62781e+16 41 3.97027e+14 81 -1 6 ababbbbabababbbabbaaaabbabaaaaababaaaaaac
+411 300 1 4 793 41 1.89893e+16 41 4.63154e+14 36 -1 4 ababbbbabababbbabbaaabbbabaaaaabbbaaaaaac
+750 643 1 4 6 41 1.9022e+16 41 4.63951e+14 98 -1 8 aaaabbbabababbbabbaaabbbabaaaaabaaaaaaaac
+741 530 1 4 4 41 7.62549e+15 41 1.85987e+14 96 -1 6 ababbbbabababbbabbaaabbbabaaaaabababaaaac
+336 300 1 2 457 41 1.52469e+16 41 3.71877e+14 23 -1 4 ababbbbabbbabbbabbaabbbbabaaaaabbbaaaaaac
+747 530 1 2 3 41 8.68943e+15 41 2.11937e+14 97 -1 6 ababbbbabababbbabbaaabbbabaaaaababbaaaaac
+701 643 1 2 19 41 1.38716e+16 41 3.38332e+14 87 -1 8 aaaabbbabababbbabbaaabbbabaaababbaaaaaaac
+752 584 1 2 3 41 1.47679e+16 41 3.60193e+14 98 -1 6 ababbbbabaaabbbabbaaabbbabaaaaabbaaaaaaac
+716 707 1 1 1 41 0 0 0 89 -1 6 ababbbaabababbbaabaaabbbabaaaaabbbaaaaaac
+748 584 1 1 2 41 0 0 0 97 -1 6 ababbbbabababbbabbaaabbbabaaaaabbaaaaabac
+751 572 1 1 2 41 0 0 0 98 -1 5 ababbbbabbbabbbabbaaabababaaaaabbaaaaaaac
+756 681 1 1 1 41 0 0 0 99 -1 7 ababbbaabbbabbbabbaabbbbabaabaabbaaaaaaac
+753 530 1 1 2 41 0 0 0 98 -1 6 ababbbbabababbbabbaaabbbabaaaaababaabaaac
+757 709 1 1 1 41 0 0 0 100 -1 7 ababbbbabababbbabbaaabababaaababbaaaaaaac
+755 530 1 1 2 41 0 0 0 99 -1 6 ababbbbabababbbabbaaabbbababaaababaaaaaac
+758 530 1 1 1 41 0 0 0 100 -1 6 bbabbbbabababbbabbaaabbbabaaaaababaaaaaac
+759 691 1 1 1 41 0 0 0 100 -1 7 abbbbbbabababbbabbaaabbbbbaaaaababaaaaaac
+367 340 1 1 118 41 1.57824e+16 41 3.84936e+14 28 -1 6 ababbababbbabbbabbaaabbbbbbaaaabbbaaaaaac
+760 681 1 1 1 41 0 0 0 100 -1 7 ababbbaabbbabbbabbaabbbbababaaabbaaaaaaac
Added: development/tests/avida_GA_lim_res/expected/data/dominant.dat
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/dominant.dat (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/dominant.dat 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,30 @@
+# Avida Dominant Data
+# Tue May 22 15:15:16 2007
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 1937.711247 41.000000 47.261250 0.024390 41 41.000000 41.000000 2 2 1 0 0 67.894674 196 041-aaaab
+10 4.72352e+11 41 1.15208e+10 0.0243902 41 41 41 117 68 64 0 0 2.90995e+11 25 041-aaaaf
+20 1.18221e+14 41 2.88344e+12 0.0243902 41 41 41 70 26 25 0 0 9.17358e+13 25 041-aaaaf
+30 5.19951e+15 41 1.26817e+14 0.0243902 41 41 41 49 25 23 2 0 5.97767e+14 264 041-aaaav
+40 8.48365e+15 41 2.06918e+14 0.0243902 41 41 41 39 24 22 2 0 7.08087e+14 264 041-aaaav
+50 1.65038e+16 41 4.02532e+14 0.0243902 41 41 41 48 28 24 3 0 4.1667e+14 300 041-aaabg
+60 2.18304e+16 41 5.32449e+14 0.0243902 41 41 41 44 24 22 4 0 5.35869e+14 411 041-aaaby
+70 2.15499e+16 41 5.25607e+14 0.0243902 41 41 41 32 16 14 4 0 6.36495e+14 411 041-aaaby
+80 2.02975e+16 41 4.95061e+14 0.0243902 41 41 41 28 16 14 4 0 4.14575e+14 411 041-aaaby
+90 1.52299e+16 41 3.7146e+14 0.0243902 41 41 41 35 16 15 4 0 3.52031e+14 548 041-aaada
+100 1.79447e+16 41 4.37677e+14 0.0243902 41 41 41 35 16 15 5 0 6.02969e+14 530 041-aaacx
Added: development/tests/avida_GA_lim_res/expected/data/historic-100.pop
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/historic-100.pop (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/historic-100.pop 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,25 @@
+#filetype genotype_data
+#format id parent_id parent_dist num_cpus total_cpus length merit gest_time fitness update_born update_dead depth sequence
+
+# 1: ID
+# 2: parent ID
+# 3: parent distance
+# 4: number of orgranisms currently alive
+# 5: total number of organisms that ever existed
+# 6: length of genome
+# 7: merit
+# 8: gestation time
+# 9: fitness
+# 10: update born
+# 11: update deactivated
+# 12: depth in phylogentic tree
+# 13: genome of organism
+
+300 295 1 0 1077 41 1.58028e+16 41 3.85434e+14 14 99 3 ababbbbabbbabbbabbaaabbbabaaaaabbbaaaaaac
+707 411 1 0 1 41 0 0 0 88 89 5 ababbbbabababbbaabaaabbbabaaaaabbbaaaaaac
+585 336 1 0 26 41 1.25995e+16 41 3.07304e+14 69 87 5 ababbbaabbbabbbabbaabbbbabaaaaabbbaaaaaac
+340 320 1 0 146 41 1.82083e+16 41 4.44105e+14 23 85 5 ababbababbbabbbabbaaabbbbbaaaaabbbaaaaaac
+637 584 1 0 1 41 0 0 0 77 78 6 aaabbbbabababbbabbaaabbbabaaaaabbaaaaaaac
+25 -1 -1 0 1249 41 7.18932e+14 41 1.75349e+13 -1 49 0 abaabbbabbbabbbabbaaabbbabaaaabbbbabaaaac
+261 25 1 0 168 41 3.15334e+15 41 7.69106e+13 7 42 1 abaabbbabbbabbbabbaaabbbabaaaaabbbabaaaac
+295 261 1 0 18 41 3.55851e+15 41 8.67929e+13 13 31 2 ababbbbabbbabbbabbaaabbbabaaaaabbbabaaaac
Added: development/tests/avida_GA_lim_res/expected/data/resource.dat
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/resource.dat (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/resource.dat 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,19 @@
+# Avida resource data
+# Tue May 22 15:15:16 2007
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+# 2: resOPT1
+# 3: resOPT2
+
+0 991.061048 991.673488
+10 6343.58 6483.17
+20 7591.17 8064.95
+30 7863.46 8492.01
+40 7811.56 8497.59
+50 7762.93 8464.66
+60 7820.73 8524.82
+70 7822.41 8533.72
+80 7643.09 8349.38
+90 7660.64 8361.25
+100 7792.72 8498.14
Added: development/tests/avida_GA_lim_res/expected/data/stats.dat
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/stats.dat (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/stats.dat 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,26 @@
+# Generic Statistics Data
+# Tue May 22 15:15:16 2007
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 3.196149 0.066104 0.066104 0.068390 0.068390 221 5.391455 0.000000 0 0 0
+10 -1.68712 0.0661041 0.0661041 0.0683903 0.0683903 -1 2.43193 0 0 0 0
+20 -2.77471 0.0661041 0.0661041 0.0683903 0.0683903 2 2.34593 0 0 0 0
+30 -0.914232 0.0661041 0.0661041 0.0683903 0.0683903 2 2.79747 0 0 0 0
+40 -0.578678 0.0661041 0.0661041 0.0683903 0.0683903 -2 2.77683 0 0 0 0
+50 0.421047 0.0661041 0.0661041 0.0683903 0.0683903 -3 2.70354 0 0 0 0
+60 0.577763 0.0661041 0.0661041 0.0683903 0.0683903 -2 2.58043 0 0 0 0
+70 0.348078 0.0661041 0.0661041 0.0683903 0.0683903 0 2.8882 0 0 0 0
+80 0.789225 0.0661041 0.0661041 0.0683903 0.0683903 -6 2.94218 0 0 0 0
+90 0.661637 0.0661041 0.0661041 0.0683903 0.0683903 1 2.96266 0 3 0 0
+100 0.352095 0.0661041 0.0661041 0.0683903 0.0683903 3 3.00222 0 3 0 0
Added: development/tests/avida_GA_lim_res/expected/data/tasks.dat
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/tasks.dat (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/tasks.dat 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,23 @@
+# Avida tasks data
+# Tue May 22 15:15:16 2007
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Optimize
+# 3: Optimize
+# 4: Optimize
+# 5: Optimize
+# 6: Optimize
+# 7: Optimize
+
+0 9 9 9 9 9 9
+10 202 202 202 202 202 202
+20 224 224 224 224 224 224
+30 225 225 225 225 225 225
+40 225 225 225 225 225 225
+50 225 225 225 225 225 225
+60 225 225 225 225 225 225
+70 225 225 225 225 225 225
+80 225 225 225 225 225 225
+90 225 225 225 225 225 225
+100 225 225 225 225 225 225
Added: development/tests/avida_GA_lim_res/expected/data/tasks_exe.dat
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/tasks_exe.dat (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/tasks_exe.dat 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,23 @@
+# Avida tasks execution data
+# Tue May 22 15:15:16 2007
+# First column gives the current update, all further columns give the number
+# of times the particular task has been executed this update.
+# 1: Update
+# 2: Optimize
+# 3: Optimize
+# 4: Optimize
+# 5: Optimize
+# 6: Optimize
+# 7: Optimize
+
+0 9 9 9 9 9 9
+10 202 202 202 202 202 202
+20 224 224 224 224 224 224
+30 225 225 225 225 225 225
+40 225 225 225 225 225 225
+50 225 225 225 225 225 225
+60 225 225 225 225 225 225
+70 225 225 225 225 225 225
+80 225 225 225 225 225 225
+90 225 225 225 225 225 225
+100 225 225 225 225 225 225
Added: development/tests/avida_GA_lim_res/expected/data/tasks_quality.dat
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/tasks_quality.dat (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/tasks_quality.dat 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,28 @@
+# Avida tasks quality data
+# Tue May 22 15:15:16 2007
+# First column gives the current update, rest give average and max task quality
+# 1: Update
+# 2: Optimize Average
+# 3: Optimize Max
+# 4: Optimize Average
+# 5: Optimize Max
+# 6: Optimize Average
+# 7: Optimize Max
+# 8: Optimize Average
+# 9: Optimize Max
+# 10: Optimize Average
+# 11: Optimize Max
+# 12: Optimize Average
+# 13: Optimize Max
+
+0 0.277896 0.338746 0.380346 0.486601 0.796560 0.882974 0.624354 0.720619 0.571992 0.777711 0.392957 0.472553
+10 0.467529 0.605346 0.42279 0.486601 0.736944 0.882974 0.811059 0.949576 0.700512 0.777711 0.546784 0.783278
+20 0.479676 0.597773 0.444498 0.532926 0.759753 0.895365 0.819361 0.94588 0.739522 0.864887 0.537724 0.773331
+30 0.492874 0.543249 0.454953 0.479201 0.760765 0.787009 0.825054 0.904923 0.745388 0.761895 0.540648 0.675419
+40 0.499988 0.537145 0.459958 0.470323 0.760085 0.771906 0.827953 0.858092 0.748373 0.761895 0.542883 0.586298
+50 0.502872 0.537415 0.462958 0.48366 0.760764 0.768379 0.828437 0.870498 0.752019 0.77284 0.542761 0.603106
+60 0.504645 0.538244 0.463699 0.475031 0.760031 0.769733 0.82945 0.87927 0.753512 0.770709 0.543852 0.619575
+70 0.508 0.567033 0.467098 0.590502 0.760325 0.923547 0.829688 0.902511 0.755112 0.773526 0.543816 0.6571
+80 0.511128 0.544399 0.468468 0.486338 0.759247 0.770369 0.831562 0.877528 0.755104 0.773526 0.54566 0.614031
+90 0.518537 0.579352 0.474669 0.49166 0.758914 0.780186 0.833241 0.904124 0.757163 0.782866 0.546917 0.6571
+100 0.520305 0.567033 0.47506 0.488562 0.757844 0.770453 0.834531 0.902511 0.764511 0.775635 0.54839 0.6571
Added: development/tests/avida_GA_lim_res/expected/data/time.dat
===================================================================
--- development/tests/avida_GA_lim_res/expected/data/time.dat (rev 0)
+++ development/tests/avida_GA_lim_res/expected/data/time.dat 2007-05-22 19:14:04 UTC (rev 1593)
@@ -0,0 +1,18 @@
+# Avida time data
+# Tue May 22 15:15:16 2007
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.048889 6750
+10 0.00577043 18.6222 6750
+20 0.00577043 34.7289 6750
+30 0.00577043 48.1822 6750
+40 0.00577043 58.9289 6750
+50 0.00577043 66.6933 6750
+60 0.00577043 74.56 6750
+70 0.00577043 82.3333 6750
+80 0.00577043 90.4178 6750
+90 0.00577043 99.8622 6750
+100 0.00577043 110.427 6750
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