[Avida-SVN] r1582 - in development/tests/string_match_embed3: . expected expected/data expected/data/archive
goingssh at myxo.css.msu.edu
goingssh at myxo.css.msu.edu
Mon May 21 05:34:57 PDT 2007
Author: goingssh
Date: 2007-05-21 08:34:57 -0400 (Mon, 21 May 2007)
New Revision: 1582
Added:
development/tests/string_match_embed3/expected/
development/tests/string_match_embed3/expected/data/
development/tests/string_match_embed3/expected/data/archive/
development/tests/string_match_embed3/expected/data/archive/091-aaaaa.org
development/tests/string_match_embed3/expected/data/archive/091-aaabm.org
development/tests/string_match_embed3/expected/data/average.dat
development/tests/string_match_embed3/expected/data/count.dat
development/tests/string_match_embed3/expected/data/detail-100.pop
development/tests/string_match_embed3/expected/data/dominant.dat
development/tests/string_match_embed3/expected/data/historic-100.pop
development/tests/string_match_embed3/expected/data/resource.dat
development/tests/string_match_embed3/expected/data/stats.dat
development/tests/string_match_embed3/expected/data/tasks.dat
development/tests/string_match_embed3/expected/data/tasks_exe.dat
development/tests/string_match_embed3/expected/data/tasks_quality.dat
development/tests/string_match_embed3/expected/data/time.dat
Log:
commiting new results of stringmatch test
Added: development/tests/string_match_embed3/expected/data/archive/091-aaaaa.org
===================================================================
--- development/tests/string_match_embed3/expected/data/archive/091-aaaaa.org (rev 0)
+++ development/tests/string_match_embed3/expected/data/archive/091-aaaaa.org 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,120 @@
+# Mon May 21 08:35:43 2007
+# Filename........: archive/091-aaaaa.org
+# Update Output...: 90
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: -1
+# Genotype ID.....: 1
+# Parent Gen ID...: -1
+# Tree Depth......: 0
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 89.000000
+# Gestation Time..: 202
+# Fitness.........: 0.440594
+# Errors..........: 4
+# Genome Size.....: 91
+# Copied Size.....: 91
+# Executed Size...: 89
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# matchstr 0 (0.000000)
+# matchstr 0 (0.000000)
+# matchstr 0 (0.000000)
+# matchstr 3 (0.562500)
+
+
+dec
+add
+h-alloc
+set-num
+h-search
+nop-A
+inc
+add
+nand
+nop-A
+mov-head
+nop-C
+h-copy
+set-flow
+nop-C
+IO
+swap-stk
+if-label
+swap-stk
+nand
+nand
+h-copy
+swap
+dec
+shift-r
+nop-C
+if-n-equ
+sub
+nand
+inc
+nop-C
+swap
+shift-r
+h-search
+jmp-head
+nand
+nop-A
+swap
+shift-l
+get-head
+shift-r
+nop-A
+set-flow
+nand
+set-num
+swap
+pop
+nop-A
+set-num
+pop
+push
+inc
+if-label
+nand
+h-copy
+pop
+h-search
+add
+if-label
+shift-r
+push
+nop-C
+nand
+match-strings
+h-alloc
+jmp-head
+h-divide
+IO
+shift-l
+get-head
+IO
+h-search
+shift-r
+set-num
+inc
+if-n-equ
+h-divide
+h-divide
+h-search
+h-search
+h-copy
+h-copy
+h-copy
+h-copy
+if-label
+nop-C
+nop-A
+h-divide
+mov-head
+nop-A
+nop-B
Added: development/tests/string_match_embed3/expected/data/archive/091-aaabm.org
===================================================================
--- development/tests/string_match_embed3/expected/data/archive/091-aaabm.org (rev 0)
+++ development/tests/string_match_embed3/expected/data/archive/091-aaabm.org 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,120 @@
+# Mon May 21 08:35:43 2007
+# Filename........: archive/091-aaabm.org
+# Update Output...: 100
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: 41
+# Genotype ID.....: 454
+# Parent Gen ID...: 1
+# Tree Depth......: 1
+# Parent Distance.: 1
+#
+# Generation: 0
+# Merit...........: 88.000000
+# Gestation Time..: 201
+# Fitness.........: 0.437811
+# Errors..........: 4
+# Genome Size.....: 91
+# Copied Size.....: 91
+# Executed Size...: 88
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# matchstr 0 (0.000000)
+# matchstr 0 (0.000000)
+# matchstr 0 (0.000000)
+# matchstr 3 (0.562500)
+
+
+dec
+add
+h-alloc
+set-num
+h-search
+nop-A
+inc
+add
+nand
+nop-A
+mov-head
+nop-C
+h-copy
+set-flow
+nop-C
+IO
+swap-stk
+if-label
+swap-stk
+nand
+nand
+h-copy
+swap
+dec
+shift-r
+nop-C
+if-n-equ
+sub
+nand
+if-less
+nop-C
+swap
+shift-r
+h-search
+jmp-head
+nand
+nop-A
+swap
+shift-l
+get-head
+shift-r
+nop-A
+set-flow
+nand
+set-num
+swap
+pop
+nop-A
+set-num
+pop
+push
+inc
+if-label
+nand
+h-copy
+pop
+h-search
+add
+if-label
+shift-r
+push
+nop-C
+nand
+match-strings
+h-alloc
+jmp-head
+h-divide
+IO
+shift-l
+get-head
+IO
+h-search
+shift-r
+set-num
+inc
+if-n-equ
+h-divide
+h-divide
+h-search
+h-search
+h-copy
+h-copy
+h-copy
+h-copy
+if-label
+nop-C
+nop-A
+h-divide
+mov-head
+nop-A
+nop-B
Added: development/tests/string_match_embed3/expected/data/average.dat
===================================================================
--- development/tests/string_match_embed3/expected/data/average.dat (rev 0)
+++ development/tests/string_match_embed3/expected/data/average.dat 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,30 @@
+# Avida Average Data
+# Mon May 21 08:35:42 2007
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 226.000000 226.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+10 90.8618 202 0.449811 0 91.0133 91 89 3.62903 0 0 0.271111 1 0.227245 0 0
+20 99.7274 200.48 0.496542 0 91.0089 90.0222 87.4444 1.99115 0.208889 0.08 0.662222 2.30667 0.0970537 0 0
+30 108.009 206.831 0.531693 0 90.9911 90.5911 88.1156 1.75781 0 0 0.871111 3.78222 0.150115 0 0
+40 111.897 203.876 0.554629 0 90.9644 90.2178 87.1867 1.5 0.244444 0.102222 1.20889 5.28889 0.152238 0 0
+50 115.003 206.209 0.567881 0 90.9644 90.6 87.5067 1.47059 0.00888889 0 1.38222 6.51556 0.335699 0 0
+60 118.349 208.356 0.581391 0 90.9511 89.9956 87.1156 1.44231 0.16 0.0711111 1.73333 8.21333 -0.00481956 0 0
+70 121.079 209.009 0.595118 0 90.9511 90.1867 87.4978 1.41509 0.0311111 0.00888889 1.84 9.56 0.0790397 0 0
+80 122.42 206.916 0.60402 0 90.9733 89.7911 87.3156 1.38889 0.151111 0.0577778 2.18667 11.3333 -0.34236 0 0
+90 122.592 207.594 0.603241 0 90.9732 90.3616 87.4554 1.45455 0.0401786 0.0267857 2.38839 12.6964 0.0852519 0 0
+100 123.23 218.213 0.601278 0 90.9689 90.1689 87.0489 1.33929 0.133333 0.0533333 2.67111 14.3289 -0.126139 0 0
Added: development/tests/string_match_embed3/expected/data/count.dat
===================================================================
--- development/tests/string_match_embed3/expected/data/count.dat (rev 0)
+++ development/tests/string_match_embed3/expected/data/count.dat 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,30 @@
+# Avida count data
+# Mon May 21 08:35:42 2007
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 1 0 0 0 226 1 226 1 1 1 0 0
+10 6750 225 62 1 0 0 0 0 0 0 164 119 225 0 0
+20 6750 225 113 2 0 0 0 47 47 18 114 121 225 0 0
+30 6750 225 128 5 0 0 0 0 0 0 107 131 225 0 0
+40 6750 225 150 12 0 0 0 55 55 23 92 131 225 0 0
+50 6750 225 153 19 0 0 0 2 2 0 102 136 225 0 0
+60 6750 225 156 26 0 0 0 36 36 16 102 139 225 0 0
+70 6750 225 159 29 0 0 0 7 7 2 100 135 225 0 0
+80 6750 225 162 40 0 0 0 34 34 13 106 139 225 0 0
+90 6720 224 154 40 0 0 0 9 9 6 110 130 224 0 0
+100 6750 225 168 44 0 0 0 30 30 12 99 134 225 0 0
Added: development/tests/string_match_embed3/expected/data/detail-100.pop
===================================================================
--- development/tests/string_match_embed3/expected/data/detail-100.pop (rev 0)
+++ development/tests/string_match_embed3/expected/data/detail-100.pop 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,185 @@
+#filetype genotype_data
+#format id parent_id parent_dist num_cpus total_cpus length merit gest_time fitness update_born update_dead depth sequence
+
+# 1: ID
+# 2: parent ID
+# 3: parent distance
+# 4: number of orgranisms currently alive
+# 5: total number of organisms that ever existed
+# 6: length of genome
+# 7: merit
+# 8: gestation time
+# 9: fitness
+# 10: update born
+# 11: update deactivated
+# 12: depth in phylogentic tree
+# 13: genome of organism
+
+454 1 1 8 13 91 119.288 201 0.593475 41 -1 1 mnrBualnpavctzcqhyhpptimjcdopecijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+1 -1 -1 7 546 91 106.574 202 0.527593 -1 -1 0 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+473 32 2 4 15 91 126.04 201 0.627067 46 -1 2 mnrBualnpavctzcqlyhpptimjcdoplciauwpaikxjazpBifaBfgiyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+523 1 1 4 9 91 147.069 202 0.728063 51 -1 1 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfglqptfunyjgcpArwsqkxqujBldssuuttttycasvab
+638 1 1 3 7 91 123.442 202 0.611097 61 -1 1 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBldsBuuttttycasvab
+231 1 1 3 18 91 120.427 202 0.596174 21 -1 1 mnrBualnpavctzcqhyhpptimjcdhplcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+709 639 1 3 6 91 139.693 202 0.691552 67 -1 3 wnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfhlyptfunyhgcpAfwsqkxqujBldssuuttttycasvab
+605 201 1 3 6 91 122.772 202 0.607784 59 -1 2 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikBjazrBifaBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+243 83 1 3 11 91 117.311 201 0.583636 21 -1 2 mnrBualnpavctzcqdyhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBhdssuuttttycasvab
+554 444 1 3 8 91 138.779 203 0.68364 53 -1 3 mnrBualnpavctzcqhyhpptimjcdoplrijuwpaikxuazpBifaBqglyptfunyjgcpprwsqkxqujBldssuuttttycasvab
+415 350 1 2 12 91 138.045 202 0.683392 40 -1 2 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfgzyptfuqyjgcpArwsqkxqujBldssuuttttycasvab
+917 444 3 2 3 91 151.396 202 0.749487 88 -1 3 mnrBualnpavctzcqhyhpptimjcdoplcijuopaikxuazpBifaBqglyptfunyjgcpprlsqkxqujBldsscuttttycasvab
+795 1 1 2 4 91 123.031 202 0.609064 78 -1 1 mnrBualnpavctzcqhyhpptimjcdohlcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+444 305 2 2 8 91 136.914 202 0.677792 41 -1 2 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxuazpBifaBqglyptfunyjgcpprwsqkxqujBldssuuttttycasvab
+546 485 1 2 6 91 120.943 202 0.598729 53 -1 4 mnrBualnpavctzcqnyhpptimjcdopldijuwpaikfjazpBifcBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+814 685 2 2 2 91 121.708 224 0.543341 79 -1 3 mnrBualnpavctzcqhyhpptimjcdoplcijuwpkikxjaApBifaBfglyptfunyjgcpArwsqkxpujBldssuittttycasvab
+663 611 1 2 5 91 136.477 201 0.678992 65 -1 4 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfglyytfunejgciArrsqkxmujBldssuuttttycasvab
+659 587 1 2 3 90 112.465 215 0.523095 64 -1 3 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyrgcpmrwsqkxqujBldssuutttycasvab
+911 398 2 2 2 90 0 0 0 87 -1 2 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqrjBAdssuutttycasvab
+862 627 1 2 3 91 138.275 201 0.687936 84 -1 3 mnrBualnpavctzcqhyhpptimjcdhplcijuwpaikxjazpBifaBfglyptfunyjgchArjsqkxqujBldasuuttttycasvab
+830 629 2 2 2 91 89.4216 205 0.436203 80 -1 3 mnrBualnpevctzcqhyhlptimjcdoplnijuwphikxjazpBifaBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+587 398 1 2 4 90 115.281 215 0.536192 57 -1 2 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyrgcpArwsqkxqujBldssuutttycasvab
+395 86 1 2 15 91 125.638 202 0.621973 34 -1 2 mnrBualnpavctzcqhyhjptimjcdoplcijuwpaikxjazpBifajfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+883 813 1 2 3 91 136.856 202 0.677503 86 -1 3 mnruualnpavctzcqhyhpptimjcdopacijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxpujqldssuuttttycasvab
+745 487 3 2 3 91 123.677 201 0.615309 72 -1 3 mrrBualnpavctzcqhyhpptimjcdoplcijiwpaikxjazpBifaBfglyptfunyjgcpArwsqkdqujBcdssouttttycasvab
+947 653 1 2 2 91 0 0 0 92 -1 4 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifdrfgzyptfuqyjgcpArwsqkxqujBldssuuttttycasvab
+652 570 1 2 6 91 90.5692 202 0.448362 62 -1 3 mnrBualnpavctzcxhyhpptimjcdoplcijuwpaihxjazpBifaBfglyptfunyjgcpArwsqkxqujBldssiuttttycasvab
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+442 305 2 2 6 91 121.059 202 0.599303 41 -1 2 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxuazpBifawfglyptfunyjgcpArwsqkxqujBldssauttttycasvab
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+529 342 3 1 1 90 115.706 259 0.446742 52 -1 3 mnrBualnpavctzrqhyhpatimjcdoplcijuwoaikgjazpBifaBfglyptfunyjgcpAwsqkxqujBldssuuttttyeasvab
+537 504 79 1 1 91 0 0 0 53 -1 3 rBfglyptfunyjgcpArwsqkxqujBldssuuttttyrasvabmnrBualnpavctzcqhyhpptimjcdoelcijuwpaikxjazpBif
+619 562 2 1 1 91 121.778 202 0.602862 60 -1 2 mnrBualnpavctwcqhdhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+640 580 2 1 1 91 0 0 0 61 -1 2 mnrBualnpavctzcqhyBpptimjcdoplcijuwpaikxjazpBifaBfglyptfujyjgcpArwsqkxqujBldssuuttttycalvab
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+819 398 1 1 1 90 0 0 0 80 -1 2 mnrBualnpavctzcqhyhppvimjcdoplcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBldssuutttycasvab
+833 236 1 1 1 92 0 0 0 80 -1 2 mnrBualnpavctzcqhyhpptimjcdojlcijuwpaikxjazpBifaBfdglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+835 415 2 1 1 91 0 0 0 80 -1 3 mnrmualnpavctzcqhyhpptimjcdopltijuwpaikxjazpBifaBfgzyptfuqyjgcpArwsqkxqujBldssuuttttycasvab
+837 236 2 1 1 91 120.983 201 0.601906 80 -1 2 mnrBualnpavctzcqhyhpptimjcdojlcijcwpaikxjazpBmfaBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+838 448 2 1 1 92 0 0 0 80 -1 3 mnrBualnpavctzcqhyhpptixjcdojlcijuwpaikxjazpBifaBfglyptfunyjgcpABrwsqkxqujBldswuuttttycasvab
+840 635 2 1 1 91 0 0 0 81 -1 3 mnrBualnpavctzcqhyhpptimjcdoplcijubnaikxjazpBifaBfhlyptfunyhgcpArwsskxqujBldssuutpttycasvab
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Added: development/tests/string_match_embed3/expected/data/dominant.dat
===================================================================
--- development/tests/string_match_embed3/expected/data/dominant.dat (rev 0)
+++ development/tests/string_match_embed3/expected/data/dominant.dat 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,30 @@
+# Avida Dominant Data
+# Mon May 21 08:35:42 2007
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 91 0.000000 0.000000 1 0 0 0 0 0.000000 1 091-aaaaa
+10 90.8678 202 0.44984 0.0049505 91 91 89 164 0 0 0 0 0.456252 1 091-aaaaa
+20 95.442 202 0.472485 0.0049505 91 91 89 107 25 13 0 0 0.557416 1 091-aaaaa
+30 99.1446 202 0.490815 0.0049505 91 91 89 79 0 0 0 0 0.619637 1 091-aaaaa
+40 101.604 202 0.50299 0.0049505 91 91 89 45 19 9 0 0 0.640349 1 091-aaaaa
+50 102.718 202 0.508504 0.0049505 91 91 89 36 0 0 0 0 0.700432 1 091-aaaaa
+60 104.331 202 0.516489 0.0049505 91 91 89 26 5 1 0 0 0.727288 1 091-aaaaa
+70 105.017 202 0.519884 0.0049505 91 91 89 23 1 1 0 0 0.826635 1 091-aaaaa
+80 105.815 202 0.523834 0.0049505 91 91 89 14 1 1 0 0 0.826635 1 091-aaaaa
+90 106.122 202 0.525354 0.0049505 91 91 89 9 0 0 0 0 0.846409 1 091-aaaaa
+100 119.288 201 0.593475 0.00497512 91 91 88 8 0 0 1 0 0.778455 454 091-aaabm
Added: development/tests/string_match_embed3/expected/data/historic-100.pop
===================================================================
--- development/tests/string_match_embed3/expected/data/historic-100.pop (rev 0)
+++ development/tests/string_match_embed3/expected/data/historic-100.pop 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,86 @@
+#filetype genotype_data
+#format id parent_id parent_dist num_cpus total_cpus length merit gest_time fitness update_born update_dead depth sequence
+
+# 1: ID
+# 2: parent ID
+# 3: parent distance
+# 4: number of orgranisms currently alive
+# 5: total number of organisms that ever existed
+# 6: length of genome
+# 7: merit
+# 8: gestation time
+# 9: fitness
+# 10: update born
+# 11: update deactivated
+# 12: depth in phylogentic tree
+# 13: genome of organism
+
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+210 1 1 0 2 91 114.399 202 0.566333 21 46 1 mnrBualnpavctzcqryhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
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+86 1 1 0 1 91 105.42 202 0.521881 7 41 1 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifajfglyptfunyjgcpArwsqkxqujBldssuuttttycasvab
+152 60 2 0 1 91 108.203 223 0.485217 14 41 2 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBglyptfunyjgcpnrwsqkxqujBldssuuttcttycasvab
+17 1 1 0 1 91 107.754 202 0.533434 7 40 1 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyjgcpAdwsqkxqujBldssuuttttycasvab
+83 1 1 0 3 91 104.806 201 0.521424 7 34 1 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfglyptfunyjgcpArwsqkxqujBhdssuuttttycasvab
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+44 1 1 0 1 91 0 0 0 7 14 1 mnrBualnpavctzcqhyhpptimjcdoplcijuwpaikxjazpBifaBfnlyptfunyjgcpArwsqkxqujBldssuuttttycasvab
Added: development/tests/string_match_embed3/expected/data/resource.dat
===================================================================
--- development/tests/string_match_embed3/expected/data/resource.dat (rev 0)
+++ development/tests/string_match_embed3/expected/data/resource.dat 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,117 @@
+# Avida resource data
+# Mon May 21 08:35:42 2007
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+# 2: res0
+# 3: res1
+# 4: res2
+# 5: res3
+# 6: res4
+# 7: res5
+# 8: res6
+# 9: res7
+# 10: res8
+# 11: res9
+# 12: res10
+# 13: res11
+# 14: res12
+# 15: res13
+# 16: res14
+# 17: res15
+# 18: res16
+# 19: res17
+# 20: res18
+# 21: res19
+# 22: res20
+# 23: res21
+# 24: res22
+# 25: res23
+# 26: res24
+# 27: res25
+# 28: res26
+# 29: res27
+# 30: res28
+# 31: res29
+# 32: res30
+# 33: res31
+# 34: res32
+# 35: res33
+# 36: res34
+# 37: res35
+# 38: res36
+# 39: res37
+# 40: res38
+# 41: res39
+# 42: res40
+# 43: res41
+# 44: res42
+# 45: res43
+# 46: res44
+# 47: res45
+# 48: res46
+# 49: res47
+# 50: res48
+# 51: res49
+# 52: res50
+# 53: res51
+# 54: res52
+# 55: res53
+# 56: res54
+# 57: res55
+# 58: res56
+# 59: res57
+# 60: res58
+# 61: res59
+# 62: res60
+# 63: res61
+# 64: res62
+# 65: res63
+# 66: res64
+# 67: res65
+# 68: res66
+# 69: res67
+# 70: res68
+# 71: res69
+# 72: res70
+# 73: res71
+# 74: res72
+# 75: res73
+# 76: res74
+# 77: res75
+# 78: res76
+# 79: res77
+# 80: res78
+# 81: res79
+# 82: res80
+# 83: res81
+# 84: res82
+# 85: res83
+# 86: res84
+# 87: res85
+# 88: res86
+# 89: res87
+# 90: res88
+# 91: res89
+# 92: res90
+# 93: res91
+# 94: res92
+# 95: res93
+# 96: res94
+# 97: res95
+# 98: res96
+# 99: res97
+# 100: res98
+# 101: res99
+
+0 9.944891 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931 9.948931
+10 83.8646 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137 104.137
+20 145.414 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318 189.318
+30 160.746 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356 266.356
+40 186.902 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027 336.027
+50 199.424 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036 399.036
+60 201.835 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02 456.02
+70 208.483 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555 507.555
+80 198.402 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163 554.163
+90 201.364 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314 596.314
+100 191.26 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435 634.435
Added: development/tests/string_match_embed3/expected/data/stats.dat
===================================================================
--- development/tests/string_match_embed3/expected/data/stats.dat (rev 0)
+++ development/tests/string_match_embed3/expected/data/stats.dat 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,26 @@
+# Generic Statistics Data
+# Mon May 21 08:35:42 2007
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.097500 0.533782 0.102587 0.763103 1 0.000000 0.000000 0 0 0
+10 6.61496e-05 0.533828 0.533782 0.7632 0.763103 0 1.69886 0 0 0 0
+20 -0.0496619 0.533813 0.533782 0.763167 0.763103 10 3.15462 0 0 0 0
+30 -0.0799982 0.533752 0.533782 0.763038 0.763103 0 3.7579 0 0 0 0
+40 -0.0977294 0.533662 0.533782 0.762845 0.763103 1 4.4483 0 0 0 0
+50 -0.110438 0.533662 0.533782 0.762845 0.763103 1 4.59082 0 0 0 0
+60 -0.118368 0.533617 0.533782 0.762748 0.763103 1 4.70678 0 0 0 0
+70 -0.135154 0.533617 0.533782 0.762748 0.763103 3 4.79205 0 0 0 0
+80 -0.142431 0.533692 0.533782 0.762909 0.763103 2 4.87632 0 0 0 0
+90 -0.138244 0.533692 0.533782 0.762909 0.763103 -4 4.85315 0 0 0 0
+100 -0.0130634 0.533677 0.533782 0.762877 0.763103 2 4.98425 0 0 0 0
Added: development/tests/string_match_embed3/expected/data/tasks.dat
===================================================================
--- development/tests/string_match_embed3/expected/data/tasks.dat (rev 0)
+++ development/tests/string_match_embed3/expected/data/tasks.dat 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,21 @@
+# Avida tasks data
+# Mon May 21 08:35:42 2007
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: MatchStr
+# 3: MatchStr
+# 4: MatchStr
+# 5: MatchStr
+
+0 0 0 0 0
+10 0 0 0 225
+20 0 0 0 225
+30 0 0 0 225
+40 0 0 0 225
+50 0 0 0 225
+60 0 0 0 225
+70 0 0 0 225
+80 0 0 0 225
+90 0 0 0 224
+100 0 0 0 225
Added: development/tests/string_match_embed3/expected/data/tasks_exe.dat
===================================================================
--- development/tests/string_match_embed3/expected/data/tasks_exe.dat (rev 0)
+++ development/tests/string_match_embed3/expected/data/tasks_exe.dat 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,21 @@
+# Avida tasks execution data
+# Mon May 21 08:35:42 2007
+# First column gives the current update, all further columns give the number
+# of times the particular task has been executed this update.
+# 1: Update
+# 2: MatchStr
+# 3: MatchStr
+# 4: MatchStr
+# 5: MatchStr
+
+0 0 0 0 0
+10 0 0 0 536
+20 0 0 0 545
+30 0 0 0 524
+40 0 0 0 534
+50 0 0 0 526
+60 0 0 0 524
+70 0 0 0 538
+80 0 0 0 550
+90 0 0 0 552
+100 0 0 0 565
Added: development/tests/string_match_embed3/expected/data/tasks_quality.dat
===================================================================
--- development/tests/string_match_embed3/expected/data/tasks_quality.dat (rev 0)
+++ development/tests/string_match_embed3/expected/data/tasks_quality.dat 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,24 @@
+# Avida tasks quality data
+# Mon May 21 08:35:42 2007
+# First column gives the current update, rest give average and max task quality
+# 1: Update
+# 2: MatchStr Average
+# 3: MatchStr Max
+# 4: MatchStr Average
+# 5: MatchStr Max
+# 6: MatchStr Average
+# 7: MatchStr Max
+# 8: MatchStr Average
+# 9: MatchStr Max
+
+0 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+10 0 0 0 0 0 0 0.466204 0.625
+20 0 0 0 0 0 0 0.47463 1.16667
+30 0 0 0 0 0 0 0.462593 0.763889
+40 0 0 0 0 0 0 0.454475 0.763889
+50 0 0 0 0 0 0 0.44429 0.729167
+60 0 0 0 0 0 0 0.45466 0.708333
+70 0 0 0 0 0 0 0.462963 0.875
+80 0 0 0 0 0 0 0.477685 0.875
+90 0 0 0 0 0 0 0.477276 0.951389
+100 0 0 0 0 0 0 0.499907 0.909722
Added: development/tests/string_match_embed3/expected/data/time.dat
===================================================================
--- development/tests/string_match_embed3/expected/data/time.dat (rev 0)
+++ development/tests/string_match_embed3/expected/data/time.dat 2007-05-21 12:34:57 UTC (rev 1582)
@@ -0,0 +1,18 @@
+# Avida time data
+# Mon May 21 08:35:42 2007
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 30
+10 0.100433 1 6750
+20 0.206286 2.30667 6750
+30 0.302185 3.78222 6750
+40 0.3932 5.28889 6750
+50 0.481778 6.51556 6750
+60 0.567497 8.21333 6750
+70 0.651022 9.56 6750
+80 0.733341 11.3333 6750
+90 0.814881 12.6964 6720
+100 0.896299 14.3289 6750
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