[Avida-SVN] r1580 - in development/tests/_task_optimize_lim_res: . expected expected/data expected/data/archive
goingssh at myxo.css.msu.edu
goingssh at myxo.css.msu.edu
Mon May 21 05:20:11 PDT 2007
Author: goingssh
Date: 2007-05-21 08:20:08 -0400 (Mon, 21 May 2007)
New Revision: 1580
Added:
development/tests/_task_optimize_lim_res/expected/
development/tests/_task_optimize_lim_res/expected/data/
development/tests/_task_optimize_lim_res/expected/data/archive/
development/tests/_task_optimize_lim_res/expected/data/archive/103-aaaaa.org
development/tests/_task_optimize_lim_res/expected/data/average.dat
development/tests/_task_optimize_lim_res/expected/data/count.dat
development/tests/_task_optimize_lim_res/expected/data/detail-100.pop
development/tests/_task_optimize_lim_res/expected/data/dominant.dat
development/tests/_task_optimize_lim_res/expected/data/historic-100.pop
development/tests/_task_optimize_lim_res/expected/data/resource.dat
development/tests/_task_optimize_lim_res/expected/data/stats.dat
development/tests/_task_optimize_lim_res/expected/data/tasks.dat
development/tests/_task_optimize_lim_res/expected/data/tasks_exe.dat
development/tests/_task_optimize_lim_res/expected/data/tasks_quality.dat
development/tests/_task_optimize_lim_res/expected/data/time.dat
Log:
commiting expected results for fixed optimize task
Added: development/tests/_task_optimize_lim_res/expected/data/archive/103-aaaaa.org
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/archive/103-aaaaa.org (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/archive/103-aaaaa.org 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,130 @@
+# Mon May 21 08:20:37 2007
+# Filename........: archive/103-aaaaa.org
+# Update Output...: 100
+# Is Viable.......: 1
+# Repro Cycle Size: 0
+# Depth to Viable.: 0
+# Update Created..: -1
+# Genotype ID.....: 1
+# Parent Gen ID...: -1
+# Tree Depth......: 0
+# Parent Distance.: -1
+#
+# Generation: 0
+# Merit...........: 100.000000
+# Gestation Time..: 237
+# Fitness.........: 0.421941
+# Errors..........: 5
+# Genome Size.....: 103
+# Copied Size.....: 103
+# Executed Size...: 100
+# Offspring.......: SELF
+#
+# Tasks Performed:
+# optimize 1 (0.941115)
+# optimize 1 (0.470749)
+
+
+h-alloc
+h-search
+set-flow
+nop-A
+mov-head
+nop-C
+IO
+sub
+nop-A
+push
+add
+IO
+dec
+nop-B
+if-n-equ
+add
+h-search
+if-label
+get-head
+nop-B
+nop-C
+h-copy
+h-copy
+h-copy
+dec
+swap-stk
+nop-B
+if-less
+h-search
+dec
+nop-B
+inc
+nop-C
+if-less
+swap
+if-n-equ
+h-search
+inc
+nop-C
+add
+h-alloc
+IO
+pop
+nop-A
+sub
+dec
+swap
+dec
+nop-B
+h-copy
+if-less
+h-alloc
+push
+nop-A
+inc
+nop-A
+h-divide
+nand
+inc
+sub
+h-search
+push
+if-less
+swap
+h-copy
+h-divide
+h-copy
+inc
+h-copy
+h-alloc
+nop-C
+push
+if-n-equ
+nop-C
+get-head
+nop-A
+get-head
+sub
+nand
+if-less
+shift-r
+shift-l
+pop
+inc
+pop
+sub
+add
+if-label
+IO
+nop-C
+pop
+swap
+h-search
+h-copy
+h-copy
+h-copy
+if-label
+nop-C
+nop-A
+h-divide
+mov-head
+nop-A
+nop-B
Added: development/tests/_task_optimize_lim_res/expected/data/average.dat
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/average.dat (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/average.dat 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,30 @@
+# Avida Average Data
+# Mon May 21 08:20:36 2007
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 226.000000 226.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+10 103.843 237 0.438157 0 102.991 103 100 3.125 0.0177778 0.00888889 0.324444 1 0.0519675 0 0
+20 113.222 236.702 0.479699 0 102.996 102.098 98.2578 2.00893 0.00444444 0 0.6 1.99111 0.178637 0 0
+30 116.059 237.947 0.487937 0 102.96 101.871 98.2 1.81452 0.0577778 0.0311111 0.831111 3.14667 0.0639032 0 0
+40 117.293 236.249 0.495824 0 102.96 101.631 97.4044 1.63043 0.0444444 0.0311111 1.13778 4.33778 0.186228 0 0
+50 117.649 241.716 0.494387 0 102.996 102.196 97.9244 1.52027 0.186667 0.0888889 1.37333 5.88444 0.280633 0 0
+60 114.117 242.244 0.479007 0 102.684 101.444 97.1867 1.37195 0.111111 0.04 1.69333 7.16 0.238338 0 0
+70 115.207 251.84 0.482207 0 102.689 101.231 96.2178 1.30058 0.0311111 0.00888889 1.88889 8.17778 0.262431 0 0
+80 118.645 255.396 0.492779 0 102.564 101.231 96.8178 1.34731 0.0266667 0.0133333 2.02222 9.39111 0.522213 0 0
+90 118.901 249.36 0.496913 0 102.707 101.6 96.9778 1.31579 0.0266667 0.0133333 2.18222 10.5111 0.251578 0 0
+100 119.759 247.442 0.503806 0 103 102.344 97.2857 1.70992 0.0982143 0.09375 2.15179 12 0.256483 0 0
Added: development/tests/_task_optimize_lim_res/expected/data/count.dat
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/count.dat (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/count.dat 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,30 @@
+# Avida count data
+# Mon May 21 08:20:36 2007
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 1 0 0 0 226 1 226 1 1 1 0 0
+10 6750 225 72 1 0 0 0 4 4 2 152 126 225 0 0
+20 6750 225 112 2 0 0 0 1 1 0 117 127 225 0 0
+30 6750 225 124 2 0 0 0 13 13 7 108 129 225 0 0
+40 6750 225 138 7 0 0 0 10 10 7 100 128 225 0 0
+50 6750 225 148 18 0 0 0 42 42 20 101 129 225 0 0
+60 6750 225 164 26 0 0 0 25 25 9 92 135 225 0 0
+70 6750 225 173 27 0 0 0 7 7 2 85 139 225 0 0
+80 6750 225 167 29 0 0 0 6 6 3 88 134 225 0 0
+90 6750 225 171 34 0 0 0 6 6 3 88 141 225 0 0
+100 6750 224 131 41 0 0 0 22 23 21 138 132 224 0 0
Added: development/tests/_task_optimize_lim_res/expected/data/detail-100.pop
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/detail-100.pop (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/detail-100.pop 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,148 @@
+#filetype genotype_data
+#format id parent_id parent_dist num_cpus total_cpus length merit gest_time fitness update_born update_dead depth sequence
+
+# 1: ID
+# 2: parent ID
+# 3: parent distance
+# 4: number of orgranisms currently alive
+# 5: total number of organisms that ever existed
+# 6: length of genome
+# 7: merit
+# 8: gestation time
+# 9: fitness
+# 10: update born
+# 11: update deactivated
+# 12: depth in phylogentic tree
+# 13: genome of organism
+
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Added: development/tests/_task_optimize_lim_res/expected/data/dominant.dat
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/dominant.dat (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/dominant.dat 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,30 @@
+# Avida Dominant Data
+# Mon May 21 08:20:36 2007
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 103 0.000000 0.000000 1 0 0 0 0 0.000000 1 103-aaaaa
+10 103.861 237 0.438232 0.00421941 103 103 100 152 4 2 0 0 0.545566 1 103-aaaaa
+20 112.45 237 0.474471 0.00421941 103 103 100 104 0 0 0 0 0.992336 1 103-aaaaa
+30 113.14 237 0.477382 0.00421941 103 103 100 81 5 3 0 0 0.966471 1 103-aaaaa
+40 113.869 237 0.480458 0.00421941 103 103 100 59 2 2 0 0 0.929356 1 103-aaaaa
+50 114.314 237 0.482338 0.00421941 103 103 100 40 11 4 0 0 0.692006 1 103-aaaaa
+60 114.792 237 0.484354 0.00421941 103 103 100 26 4 2 0 0 0.655267 1 103-aaaaa
+70 115.138 237 0.485813 0.00421941 103 103 100 18 1 0 0 0 0.669961 1 103-aaaaa
+80 115.301 237 0.486502 0.00421941 103 103 100 17 0 0 0 0 0.655267 1 103-aaaaa
+90 115.495 237 0.487319 0.00421941 103 103 100 10 1 0 0 0 0.655267 1 103-aaaaa
+100 116.097 237 0.489859 0.00421941 103 103 100 15 0 0 0 0 0.698976 1 103-aaaaa
Added: development/tests/_task_optimize_lim_res/expected/data/historic-100.pop
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/historic-100.pop (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/historic-100.pop 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,74 @@
+#filetype genotype_data
+#format id parent_id parent_dist num_cpus total_cpus length merit gest_time fitness update_born update_dead depth sequence
+
+# 1: ID
+# 2: parent ID
+# 3: parent distance
+# 4: number of orgranisms currently alive
+# 5: total number of organisms that ever existed
+# 6: length of genome
+# 7: merit
+# 8: gestation time
+# 9: fitness
+# 10: update born
+# 11: update deactivated
+# 12: depth in phylogentic tree
+# 13: genome of organism
+
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+381 148 1 0 2 103 111.205 237 0.469217 42 68 2 ruzavcqoagnqmbdnuyxbctttmhbeumblceigulcnrqfaomimbtergalasplougeitstltrcgdcxbxopejkflfonyqcfiutttycasvab
+496 280 1 0 1 103 114.811 237 0.484436 53 67 2 ruzavcqoagnqmbdnuyxbctttmhbeumblceidulcnrqqaomimbtergalasplougeitstltrcgdcxaxopzjkflfonyqcfiutttycasvab
+266 129 2 0 4 103 118.688 236 0.502915 30 66 3 ruzavcqoagnqmbdnuyxbctttihbcumblceidulcnryfaomimbtergalaspllugeitstltrcgdcxaxopejkfnfonyqcfiutttycasvab
+492 1 1 0 1 103 0 0 0 53 66 1 ruzavcqoagnqmbdnuyxbctttmhbeumblceidulcorqfaomimbtergalasplougeitstltrcgdcxaxopejkflfonyqcfiutttycasvab
+503 1 1 0 1 103 0 0 0 55 62 1 ruzavcqoagnqmbdnuyxbctttmhbeumblceidulcnrqfaomimbtergalasplougeitstltrcgdcxapopejkflfonyqcfiutttycasvab
+333 189 1 0 1 103 117.309 237 0.494974 37 59 2 rwzavcqoagnqmbdnuyxbctttmhbuumblceidulcnrqfaomimbtergalasplougeitstltrcgacxaxlpejkflfonyqcfiutttycasvab
+218 1 1 0 2 103 114.357 236 0.484562 25 58 1 ruzavcqoagnqmbdnuyxbctttmhbeumblceidulcnrqfaomimbtergalasplougeitstltrcgdcxaxopejkfbfonyqcfiutttycasvab
+280 1 1 0 2 103 144.151 237 0.608234 33 54 1 ruzavcqoagnqmbdnuyxbctttmhbeumblceidulcnrqfaomimbtergalasplougeitstltrcgdcxaxopzjkflfonyqcfiutttycasvab
+312 68 1 0 1 103 110.434 238 0.46401 34 52 2 ruzavcqoagnqmbdnuyxbctttmhbeumnlceidulcnrqfaomimbtergalasplougeitstltrcgdcxaxopejkfifonyjcfiutttycasvab
+189 1 3 0 3 103 133.003 237 0.561193 23 51 1 rwzavcqoagnqmbdnuyxbctttmhbuumblceidulcnrqfaomimbtergalasplougeitstltrcgdcxaxlpejkflfonyqcfiutttycasvab
+129 51 1 0 1 103 125.196 236 0.53049 16 42 2 ruzavcqoagnqmbdnuyxbctttmhbcumblceidulcnryfaomimbtergalaspllugeitstltrcgdcxaxopejkflfonyqcfiutttycasvab
+293 1 1 0 1 103 0 0 0 33 42 1 ruzavcqoadnqmbdnuyxbctttmhbeumblceidulcnrqfaomimbtergalasplougeitstltrcgdcxaxopejkflfonyqcfiutttycasvab
+38 1 1 0 3 103 109.33 238 0.459371 8 35 1 ruzavcqoagnqmbdnuyxbctttmhbeumblxeidulcnrqfaomimbtergalasplougeitstltrcgdcxaxopejkflfonyqcfiutttycasvab
+62 1 1 0 1 103 104.678 237 0.44168 9 33 1 ruzavcqoagnqmbdnuyxbctttmhbeumblceidulcnrqfaomimbtergalasplougeitstltrcgdcxaxopejkflfonyqcaiutttycasvab
+159 1 1 0 1 103 0 0 0 17 33 1 ruzavcqoagnqmbdnuyxbctttmhbeumblceidulcnrqfaomimbtergalaspluugeitstltrcgdcxaxopejkflfonyqcfiutttycasvab
+197 1 1 0 1 103 0 0 0 23 30 1 ruzavcqoagnqmednuyxbctttmhbeumblceidulcnrqfaomimbtergalasplougeitstltrcgdcxaxopejkflfonyqcfiutttycasvab
+112 67 1 0 1 103 0 0 0 16 26 2 ruzavcqoagnqmbdnuyxbctttchbeomblceidulcnrqfaomimbtergnlasplougeitstltrcgdcxaxopxjkflfonyqcfiutttycasvab
+67 1 3 0 1 103 112.293 236 0.475818 9 26 1 ruzavcqoagnqmbdnuyxbctttchbeomblceidulcnrqfaomimbtergalasplougeitstltrcgdcxaxopxjkflfonyqcfiutttycasvab
+23 1 1 0 2 103 121.534 237 0.512803 8 25 1 ruzavcqoagnqmbdiuyxbctttmhbeumblceidulcnrqfaomimbtergalasplougeitstltrcgdcxaxopejkflfonyqcfiutttycasvab
+82 1 1 0 1 103 0 0 0 9 16 1 ruzavcqoagnqmbdnuyxbctttmhbeumblceidulcnrqfaxmimbtergalasplougeitstltrcgdcxaxopejkflfonyqcfiutttycasvab
+51 1 2 0 1 103 0 0 0 8 16 1 ruzavcqoagnqmbdnuyxbctttmhbcumblceidulcnryfaomimbtergalasplougeitstltrcgdcxaxopejkflfonyqcfiutttycasvab
Added: development/tests/_task_optimize_lim_res/expected/data/resource.dat
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/resource.dat (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/resource.dat 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,19 @@
+# Avida resource data
+# Mon May 21 08:20:36 2007
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+# 2: resOPT1
+# 3: resOPT4
+
+0 3.917505 3.948369
+10 3.33605 4.45993
+20 7.15147 9.17182
+30 3.67512 8.13949
+40 4.62582 9.80376
+50 1.07531 3.69987
+60 1.43009 3.30298
+70 3.44213 6.03719
+80 4.53221 8.61038
+90 6.43574 11.6146
+100 1.98373 6.06549
Added: development/tests/_task_optimize_lim_res/expected/data/stats.dat
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/stats.dat (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/stats.dat 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,26 @@
+# Generic Statistics Data
+# Mon May 21 08:20:36 2007
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.097500 0.571758 0.102587 0.848066 1 0.000000 0.000000 0 0 0
+10 0.000169846 0.57173 0.571758 0.848002 0.848066 0 2.00987 0 0 0 0
+20 -0.0109567 0.571744 0.571758 0.848034 0.848066 1 3.20775 0 0 0 0
+30 -0.021869 0.571634 0.571758 0.847777 0.848066 -2 3.69855 0 0 0 0
+40 -0.0314806 0.571634 0.571758 0.847777 0.848066 0 4.15739 0 0 0 0
+50 -0.0246742 0.571744 0.571758 0.848034 0.848066 -2 4.49726 0 0 0 0
+60 0.0110991 0.570779 0.571758 0.845782 0.848066 5 4.7792 0 0 0 0
+70 0.00745186 0.570792 0.571758 0.845815 0.848066 0 4.93617 0 0 0 0
+80 -0.0128213 0.570406 0.571758 0.844914 0.848066 -2 4.90423 0 0 0 0
+90 -0.019495 0.570848 0.571758 0.845943 0.848066 -1 4.99376 0 0 0 0
+100 -0.0280728 0.571758 0.571758 0.848066 0.848066 -9 4.65142 0 0 0 0
Added: development/tests/_task_optimize_lim_res/expected/data/tasks.dat
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/tasks.dat (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/tasks.dat 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,19 @@
+# Avida tasks data
+# Mon May 21 08:20:36 2007
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Optimize
+# 3: Optimize
+
+0 0 0
+10 225 225
+20 225 225
+30 225 225
+40 225 225
+50 225 225
+60 225 225
+70 225 225
+80 225 225
+90 225 225
+100 224 224
Added: development/tests/_task_optimize_lim_res/expected/data/tasks_exe.dat
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/tasks_exe.dat (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/tasks_exe.dat 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,19 @@
+# Avida tasks execution data
+# Mon May 21 08:20:36 2007
+# First column gives the current update, all further columns give the number
+# of times the particular task has been executed this update.
+# 1: Update
+# 2: Optimize
+# 3: Optimize
+
+0 0 0
+10 225 225
+20 225 225
+30 225 225
+40 225 225
+50 225 225
+60 225 225
+70 225 225
+80 225 225
+90 225 225
+100 224 224
Added: development/tests/_task_optimize_lim_res/expected/data/tasks_quality.dat
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/tasks_quality.dat (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/tasks_quality.dat 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,20 @@
+# Avida tasks quality data
+# Mon May 21 08:20:36 2007
+# First column gives the current update, rest give average and max task quality
+# 1: Update
+# 2: Optimize Average
+# 3: Optimize Max
+# 4: Optimize Average
+# 5: Optimize Max
+
+0 0.000000 0.000000 0.000000 0.000000
+10 0.939624 0.941394 0.472049 0.473752
+20 0.966809 1 0.422463 0.47382
+30 0.972612 1 0.411978 0.473798
+40 0.971485 1 0.414074 0.473798
+50 0.977404 1 0.402937 0.473806
+60 0.974781 1 0.407761 0.473687
+70 0.969847 1 0.416375 0.47376
+80 0.972545 1 0.410957 0.4738
+90 0.973941 1 0.409548 0.473743
+100 0.969598 1 0.417367 0.473819
Added: development/tests/_task_optimize_lim_res/expected/data/time.dat
===================================================================
--- development/tests/_task_optimize_lim_res/expected/data/time.dat (rev 0)
+++ development/tests/_task_optimize_lim_res/expected/data/time.dat 2007-05-21 12:20:08 UTC (rev 1580)
@@ -0,0 +1,18 @@
+# Avida time data
+# Mon May 21 08:20:36 2007
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 30
+10 0.0893952 1 6750
+20 0.18139 1.99111 6750
+30 0.270932 3.14667 6750
+40 0.357233 4.33778 6750
+50 0.443591 5.88444 6750
+60 0.529253 7.16 6750
+70 0.616473 8.17778 6750
+80 0.702608 9.39111 6750
+90 0.787548 10.5111 6750
+100 0.871623 12 6750
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