[Avida-SVN] r1703 - in development/tests/energy_asex_1000u: . expected expected/data
brysonda at myxo.css.msu.edu
brysonda at myxo.css.msu.edu
Wed Jun 20 11:16:21 PDT 2007
Author: brysonda
Date: 2007-06-20 14:16:21 -0400 (Wed, 20 Jun 2007)
New Revision: 1703
Added:
development/tests/energy_asex_1000u/expected/
development/tests/energy_asex_1000u/expected/data/
development/tests/energy_asex_1000u/expected/data/average.dat
development/tests/energy_asex_1000u/expected/data/count.dat
development/tests/energy_asex_1000u/expected/data/dominant.dat
development/tests/energy_asex_1000u/expected/data/instruction.dat
development/tests/energy_asex_1000u/expected/data/instruction_histogram.dat
development/tests/energy_asex_1000u/expected/data/resource.dat
development/tests/energy_asex_1000u/expected/data/stats.dat
development/tests/energy_asex_1000u/expected/data/tasks.dat
development/tests/energy_asex_1000u/expected/data/tasks_exe.dat
development/tests/energy_asex_1000u/expected/data/time.dat
Log:
Add new expected results for energy model consistency test.
Added: development/tests/energy_asex_1000u/expected/data/average.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/average.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/average.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,30 @@
+# Avida Average Data
+# Wed Jun 20 14:21:05 2007
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 97.000000 348.000000 0.000000 0.000000 100.000000 100.000000 97.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+100 97 348 0 0 100 100 97 1 0 0 0 0 0 0 0
+200 97 348 0 0 100 100 97 1 0 0 0 0 0 0 0
+300 97 348 0 0 100 100 97 1 0 0 0 0 0 0 0
+400 4.80909 348 0.278736 0 100 100 97 2 0 0 0 1 0.411824 0 0
+500 4.80909 348 0.278736 0 100 100 97 2 0 0 0 1 0.411824 0 0.198809
+600 4.80909 348 0.278736 0 100 100 97 2 0 0 0 1 0.411824 0 0.00480909
+700 3.86732 348 0.278736 0 100 100 97 2 0.25 0 0.25 2 0.812366 0 0.00759659
+800 3.86732 348 0.278736 0 100 100 97 2 0 0 0.25 2 0.812366 0 0.00953025
+900 3.86732 348 0.278736 0 100 100 97 2 0 0 0.25 2 0.812366 0 0.00472116
+1000 3.86732 348 0.278736 0 100 100 97 2 0 0 0.25 2 0.812366 0 0.00472116
Added: development/tests/energy_asex_1000u/expected/data/count.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/count.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/count.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,30 @@
+# Avida count data
+# Wed Jun 20 14:21:05 2007
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 1 1 1 1 0 0 0 1 0 1 1 1 1 0 0
+100 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0
+200 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0
+300 1 1 1 1 0 0 0 0 0 0 1 1 1 0 0
+400 2 2 1 1 0 0 0 0 0 0 2 1 2 0 0
+500 2 2 1 1 0 0 0 0 0 0 2 1 2 0 0
+600 2 2 1 1 0 0 0 0 0 0 2 1 2 0 0
+700 3 4 2 1 0 0 0 1 0 0 3 2 4 0 0
+800 4 4 2 1 0 0 0 0 0 0 3 2 4 0 0
+900 4 4 2 1 0 0 0 0 0 0 3 2 4 0 0
+1000 4 4 2 1 0 0 0 0 0 0 3 2 4 0 0
Added: development/tests/energy_asex_1000u/expected/data/dominant.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/dominant.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/dominant.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,30 @@
+# Avida Dominant Data
+# Wed Jun 20 14:21:05 2007
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 100 0.000000 0.000000 1 0 0 0 0 0.000000 1 100-aaaaa
+100 0 0 0 0 100 0 0 1 0 0 0 0 0 1 100-aaaaa
+200 0 0 0 0 100 0 0 1 0 0 0 0 0 1 100-aaaaa
+300 0 0 0 0 100 0 0 1 0 0 0 0 0 1 100-aaaaa
+400 4.80909 348 0.278736 0.00287356 100 100 97 2 0 0 0 0 0.278736 1 100-aaaaa
+500 4.80909 348 0.278736 0.00287356 100 100 97 2 0 0 0 0 0.278736 1 100-aaaaa
+600 4.80909 348 0.278736 0.00287356 100 100 97 2 0 0 0 0 0.278736 1 100-aaaaa
+700 4.18125 348 0.278736 0.00287356 100 100 97 3 1 0 0 0 0.278736 1 100-aaaaa
+800 4.18125 348 0.278736 0.00287356 100 100 97 3 0 0 0 0 0.278736 1 100-aaaaa
+900 4.18125 348 0.278736 0.00287356 100 100 97 3 0 0 0 0 0.278736 1 100-aaaaa
+1000 4.18125 348 0.278736 0.00287356 100 100 97 3 0 0 0 0 0.278736 1 100-aaaaa
Added: development/tests/energy_asex_1000u/expected/data/instruction.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/instruction.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/instruction.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,48 @@
+# Avida instruction execution data
+# Wed Jun 20 14:21:05 2007
+# 1: Update
+# 2: nop-A
+# 3: nop-B
+# 4: nop-C
+# 5: if-n-equ
+# 6: if-less
+# 7: pop
+# 8: push
+# 9: swap-stk
+# 10: swap
+# 11: shift-r
+# 12: shift-l
+# 13: inc
+# 14: dec
+# 15: add
+# 16: sub
+# 17: nand
+# 18: IO
+# 19: h-alloc
+# 20: h-divide
+# 21: h-copy
+# 22: h-search
+# 23: mov-head
+# 24: jmp-head
+# 25: get-head
+# 26: if-label
+# 27: set-flow
+# 28: sense-m100
+# 29: if-equ-0
+# 30: time
+# 31: sleep1
+# 32: sleep2
+# 33: sleep3
+# 34: sleep4
+
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+200 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+300 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+400 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 82 2 2 200 4 200 0 0 200 0 0 0 0 0 0 0 0
+500 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 82 2 2 200 4 200 0 0 200 0 0 0 0 0 0 0 0
+600 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 82 2 2 200 4 200 0 0 200 0 0 0 0 0 0 0 0
+700 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 164 4 4 400 8 400 0 0 400 0 0 0 0 0 0 0 0
+800 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 164 4 4 400 8 400 0 0 400 0 0 0 0 0 0 0 0
+900 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 164 4 4 400 8 400 0 0 400 0 0 0 0 0 0 0 0
+1000 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 164 4 4 400 8 400 0 0 400 0 0 0 0 0 0 0 0
Added: development/tests/energy_asex_1000u/expected/data/instruction_histogram.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/instruction_histogram.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/instruction_histogram.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,46 @@
+# 1: Update
+# 2: nop-A
+# 3: nop-B
+# 4: nop-C
+# 5: if-n-equ
+# 6: if-less
+# 7: pop
+# 8: push
+# 9: swap-stk
+# 10: swap
+# 11: shift-r
+# 12: shift-l
+# 13: inc
+# 14: dec
+# 15: add
+# 16: sub
+# 17: nand
+# 18: IO
+# 19: h-alloc
+# 20: h-divide
+# 21: h-copy
+# 22: h-search
+# 23: mov-head
+# 24: jmp-head
+# 25: get-head
+# 26: if-label
+# 27: set-flow
+# 28: sense-m100
+# 29: if-equ-0
+# 30: time
+# 31: sleep1
+# 32: sleep2
+# 33: sleep3
+# 34: sleep4
+
+0 203 1 47 0 0 0 0 0 0 0 0 0 0 0 0 0 41 1 1 1 2 2 0 0 1 0 0 0 0 0 0 0 0
+100 186 1 55 0 0 0 0 0 0 0 0 0 0 0 0 0 47 2 1 1 3 3 0 0 1 0 0 0 0 0 0 0 0
+200 153 1 71 0 0 0 0 0 0 0 0 0 0 0 0 0 64 2 1 1 3 3 0 0 1 0 0 0 0 0 0 0 0
+300 119 1 88 0 0 0 0 0 0 0 0 0 0 0 0 0 81 2 1 1 3 3 0 0 1 0 0 0 0 0 0 0 0
+400 403 2 95 0 0 0 0 0 0 0 0 0 0 0 0 0 82 3 2 2 5 4 0 0 2 0 0 0 0 0 0 0 0
+500 338 2 127 0 0 0 0 0 0 0 0 0 0 0 0 0 111 4 2 2 6 6 0 0 2 0 0 0 0 0 0 0 0
+600 270 2 160 0 0 0 0 0 0 0 0 0 0 0 0 0 145 4 2 2 6 6 0 0 2 0 1 0 0 0 0 0 0
+700 412 4 188 0 0 0 0 0 0 0 0 0 0 0 0 0 163 4 4 4 8 8 0 0 4 0 1 0 0 0 0 0 0
+800 737 4 223 0 0 0 0 0 0 0 0 0 0 0 0 0 190 8 4 5 12 12 0 0 4 0 1 0 0 0 0 0 0
+900 605 4 287 0 0 0 0 0 0 0 0 0 0 0 0 0 256 8 4 5 12 12 0 0 4 0 2 0 0 0 0 1 0
+1000 471 4 356 0 0 0 0 0 0 0 0 0 0 0 0 0 321 8 4 5 12 12 0 0 4 0 2 0 0 0 0 1 0
Added: development/tests/energy_asex_1000u/expected/data/resource.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/resource.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/resource.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,258 @@
+# Avida resource data
+# Wed Jun 20 14:21:05 2007
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+# 2: sun_light
+
+0 1.000000
+4 1
+8 1
+12 1
+16 1
+20 1
+24 1
+28 1
+32 1
+36 1
+40 1
+44 1
+48 1
+52 1
+56 1
+60 1
+64 1
+68 1
+72 1
+76 1
+80 1
+84 1
+88 1
+92 1
+96 1
+100 1
+104 1
+108 1
+112 1
+116 1
+120 1
+124 1
+128 1
+132 1
+136 1
+140 1
+144 1
+148 1
+152 1
+156 1
+160 1
+164 1
+168 1
+172 1
+176 1
+180 1
+184 1
+188 1
+192 1
+196 1
+200 1
+204 1
+208 1
+212 1
+216 1
+220 1
+224 1
+228 1
+232 1
+236 1
+240 1
+244 1
+248 1
+252 1
+256 1
+260 1
+264 1
+268 1
+272 1
+276 1
+280 1
+284 1
+288 1
+292 1
+296 1
+300 1
+304 1
+308 1
+312 1
+316 1
+320 1
+324 1
+328 1
+332 1
+336 1
+340 1
+344 1
+348 1
+352 1
+356 1
+360 1
+364 1
+368 1
+372 1
+376 1
+380 1
+384 1
+388 1
+392 1
+396 1
+400 1
+404 1
+408 1
+412 1
+416 1
+420 1
+424 1
+428 1
+432 1
+436 1
+440 1
+444 1
+448 1
+452 1
+456 1
+460 1
+464 1
+468 1
+472 1
+476 1
+480 1
+484 1
+488 1
+492 1
+496 1
+500 1
+504 1
+508 1
+512 1
+516 1
+520 1
+524 1
+528 1
+532 1
+536 1
+540 1
+544 1
+548 1
+552 1
+556 1
+560 1
+564 1
+568 1
+572 1
+576 1
+580 1
+584 1
+588 1
+592 1
+596 1
+600 1
+604 1
+608 1
+612 1
+616 1
+620 1
+624 1
+628 1
+632 1
+636 1
+640 1
+644 1
+648 1
+652 1
+656 1
+660 1
+664 1
+668 1
+672 1
+676 1
+680 1
+684 1
+688 1
+692 1
+696 1
+700 1
+704 1
+708 1
+712 1
+716 1
+720 1
+724 1
+728 1
+732 1
+736 1
+740 1
+744 1
+748 1
+752 1
+756 1
+760 1
+764 1
+768 1
+772 1
+776 1
+780 1
+784 1
+788 1
+792 1
+796 1
+800 1
+804 1
+808 1
+812 1
+816 1
+820 1
+824 1
+828 1
+832 1
+836 1
+840 1
+844 1
+848 1
+852 1
+856 1
+860 1
+864 1
+868 1
+872 1
+876 1
+880 1
+884 1
+888 1
+892 1
+896 1
+900 1
+904 1
+908 1
+912 1
+916 1
+920 1
+924 1
+928 1
+932 1
+936 1
+940 1
+944 1
+948 1
+952 1
+956 1
+960 1
+964 1
+968 1
+972 1
+976 1
+980 1
+984 1
+988 1
+992 1
+996 1
+1000 1
Added: development/tests/energy_asex_1000u/expected/data/stats.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/stats.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/stats.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,26 @@
+# Generic Statistics Data
+# Wed Jun 20 14:21:05 2007
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.565047 0.565047 0.832517 0.832517 1 0.000000 0.000000 0 0 0
+100 0 0.565047 0.565047 0.832517 0.832517 0 0 0 0 0 0
+200 0 0.565047 0.565047 0.832517 0.832517 0 0 0 0 0 0
+300 0 0.565047 0.565047 0.832517 0.832517 0 0 0 0 0 0
+400 0 0.565047 0.565047 0.832517 0.832517 0 0 0 0 0 0
+500 0 0.565047 0.565047 0.832517 0.832517 0 0 0 0 0 0
+600 0 0.565047 0.565047 0.832517 0.832517 0 0 0 0 0 0
+700 0 0.565047 0.565047 0.832517 0.832517 1 0.562335 0 0 0 0
+800 0 0.565047 0.565047 0.832517 0.832517 0 0.562335 0 0 0 0
+900 0 0.565047 0.565047 0.832517 0.832517 0 0.562335 0 0 0 0
+1000 0 0.565047 0.565047 0.832517 0.832517 0 0.562335 0 0 0 0
Added: development/tests/energy_asex_1000u/expected/data/tasks.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/tasks.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/tasks.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,22 @@
+# Avida tasks data
+# Wed Jun 20 14:21:05 2007
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Echo
+# 3: Nand
+# 4: Not
+# 5: And
+# 6: OrNot
+
+0 0 0 0 0 0
+100 0 0 0 0 0
+200 0 0 0 0 0
+300 0 0 0 0 0
+400 2 0 0 0 0
+500 2 0 0 0 0
+600 2 0 0 0 0
+700 4 0 0 0 0
+800 4 0 0 0 0
+900 4 0 0 0 0
+1000 4 0 0 0 0
Added: development/tests/energy_asex_1000u/expected/data/tasks_exe.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/tasks_exe.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/tasks_exe.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,21 @@
+# Avida tasks execution data
+# Wed Jun 20 14:21:05 2007
+# First column gives the current update, all further columns give the number
+# of times the particular task has been executed this update.
+# 1: Update
+# 2: Echo
+# 3: Nand
+# 4: Not
+# 5: And
+# 6: OrNot
+
+100 0 0 0 0 0
+200 0 0 0 0 0
+300 0 0 0 0 0
+400 70 0 0 0 0
+500 70 0 0 0 0
+600 70 0 0 0 0
+700 140 0 0 0 0
+800 140 0 0 0 0
+900 140 0 0 0 0
+1000 140 0 0 0 0
Added: development/tests/energy_asex_1000u/expected/data/time.dat
===================================================================
--- development/tests/energy_asex_1000u/expected/data/time.dat (rev 0)
+++ development/tests/energy_asex_1000u/expected/data/time.dat 2007-06-20 18:16:21 UTC (rev 1703)
@@ -0,0 +1,18 @@
+# Avida time data
+# Wed Jun 20 14:21:05 2007
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 1
+100 1.03093 0 1
+200 2.06186 0 1
+300 3.09278 0 1
+400 14.5981 1 2
+500 35.3921 1 2
+600 56.186 1 2
+700 77.3547 2 3
+800 103.212 2 4
+900 129.07 2 4
+1000 154.928 2 4
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