[Avida-SVN] r1918 - in branches/energy/tests: . energy_deme_level_res energy_deme_level_res/config energy_deme_level_res/expected energy_deme_level_res/expected/data
beckma24 at myxo.css.msu.edu
beckma24 at myxo.css.msu.edu
Thu Aug 9 11:08:29 PDT 2007
Author: beckma24
Date: 2007-08-09 14:08:29 -0400 (Thu, 09 Aug 2007)
New Revision: 1918
Added:
branches/energy/tests/energy_deme_level_res/
branches/energy/tests/energy_deme_level_res/config/
branches/energy/tests/energy_deme_level_res/config/avida.cfg
branches/energy/tests/energy_deme_level_res/config/echo40.org
branches/energy/tests/energy_deme_level_res/config/environment-5tasks.cfg
branches/energy/tests/energy_deme_level_res/config/events-ConstResource.cfg
branches/energy/tests/energy_deme_level_res/config/instset-TEST.cfg
branches/energy/tests/energy_deme_level_res/expected/
branches/energy/tests/energy_deme_level_res/expected/data/
branches/energy/tests/energy_deme_level_res/expected/data/average.dat
branches/energy/tests/energy_deme_level_res/expected/data/count.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_donor.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_fitness.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_gest_time.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_instruction-0.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_instruction-1.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_lifetime_fitness.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_merit.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_mut_rates.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_receiver.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_resources.dat
branches/energy/tests/energy_deme_level_res/expected/data/deme_spacial_resource_deme_ResB_0.m
branches/energy/tests/energy_deme_level_res/expected/data/deme_spacial_resource_deme_ResB_1.m
branches/energy/tests/energy_deme_level_res/expected/data/deme_task.dat
branches/energy/tests/energy_deme_level_res/expected/data/dominant.dat
branches/energy/tests/energy_deme_level_res/expected/data/instruction.dat
branches/energy/tests/energy_deme_level_res/expected/data/instruction_histogram.dat
branches/energy/tests/energy_deme_level_res/expected/data/resource.dat
branches/energy/tests/energy_deme_level_res/expected/data/sleep.dat
branches/energy/tests/energy_deme_level_res/expected/data/stats.dat
branches/energy/tests/energy_deme_level_res/expected/data/tasks.dat
branches/energy/tests/energy_deme_level_res/expected/data/tasks_exe.dat
branches/energy/tests/energy_deme_level_res/expected/data/time.dat
branches/energy/tests/energy_deme_level_res/test_list
Log:
Added updated energy_deme_level_res consistency test
Added: branches/energy/tests/energy_deme_level_res/config/avida.cfg
===================================================================
--- branches/energy/tests/energy_deme_level_res/config/avida.cfg (rev 0)
+++ branches/energy/tests/energy_deme_level_res/config/avida.cfg 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,233 @@
+#############################################################################
+# This file includes all the basic run-time defines for Avida.
+# For more information, see doc/config.html
+#############################################################################
+
+VERSION_ID 2.7.0 # Do not change this value.
+
+### GENERAL_GROUP ###
+# General Settings
+ANALYZE_MODE 0 # 0 = Disabled
+ # 1 = Enabled
+ # 2 = Interactive
+VIEW_MODE 1 # Initial viewer screen
+CLONE_FILE - # Clone file to load
+VERBOSITY 4 # Control output verbosity
+
+### ARCH_GROUP ###
+# Architecture Variables
+WORLD_X 10 # Width of the Avida world
+WORLD_Y 20 # Height of the Avida world
+WORLD_GEOMETRY 2 # 1 = Bounded Grid
+ # 2 = Torus
+NUM_DEMES 2 # Number of independed groups in the population; 0=off
+RANDOM_SEED 7 # Random number seed (0 for based on time)
+HARDWARE_TYPE 0 # 0 = Original CPUs
+ # 1 = New SMT CPUs
+ # 2 = Transitional SMT
+
+### CONFIG_FILE_GROUP ###
+# Configuration Files
+DATA_DIR data # Directory in which config files are found
+INST_SET instset-TEST.cfg # File containing instruction set
+EVENT_FILE events-ConstResource.cfg # File containing list of events during run
+ANALYZE_FILE analyze.cfg # File used for analysis mode
+ENVIRONMENT_FILE environment-5tasks.cfg # File that describes the environment
+START_CREATURE echo40.org # Organism to seed the soup
+
+### REPRODUCTION_GROUP ###
+# Birth and Death
+BIRTH_METHOD 0 # Which organism should be replaced on birth?
+ # 0 = Random organism in neighborhood
+ # 1 = Oldest in neighborhood
+ # 2 = Largest Age/Merit in neighborhood
+ # 3 = None (use only empty cells in neighborhood)
+ # 4 = Random from population (Mass Action)
+ # 5 = Oldest in entire population
+ # 6 = Random within deme
+ # 7 = Organism faced by parent
+ # 8 = Next grid cell (id+1)
+ # 9= Largest energy used in entire population
+ # 10= Largest energy used in neighborhood
+PREFER_EMPTY 1 # Give empty cells preference in offsping placement?
+DEATH_METHOD 0 # 0 = Never die of old age.
+ # 1 = Die when inst executed = AGE_LIMIT (+deviation)
+ # 2 = Die when inst executed = length*AGE_LIMIT (+dev)
+AGE_LIMIT 20 # Modifies DEATH_METHOD
+AGE_DEVIATION 0 # Creates a distribution around AGE_LIMIT
+ALLOC_METHOD 0 # (Orignal CPU Only)
+ # 0 = Allocated space is set to default instruction.
+ # 1 = Set to section of dead genome (Necrophilia)
+ # 2 = Allocated space is set to random instruction.
+DIVIDE_METHOD 1 # 0 = Divide leaves state of mother untouched.
+ # 1 = Divide resets state of mother
+ # (after the divide, we have 2 children)
+ # 2 = Divide resets state of current thread only
+ # (does not touch possible parasite threads)
+GENERATION_INC_METHOD 1 # 0 = Only the generation of the child is
+ # increased on divide.
+ # 1 = Both the generation of the mother and child are
+ # increased on divide (good with DIVIDE_METHOD 1).
+
+### RECOMBINATION_GROUP ###
+# Sexual Recombination and Modularity
+RECOMBINATION_PROB 1.0 # probability of recombination in div-sex
+MAX_BIRTH_WAIT_TIME -1 # Updates incipiant orgs can wait for crossover
+MODULE_NUM 0 # number of modules in the genome
+CONT_REC_REGS 1 # are (modular) recombination regions continuous
+CORESPOND_REC_REGS 1 # are (modular) recombination regions swapped randomly
+ # or with corresponding positions?
+TWO_FOLD_COST_SEX 0 # 1 = only one recombined offspring is born.
+ # 2 = both offspring are born
+SAME_LENGTH_SEX 0 # 0 = recombine with any genome
+ # 1 = only recombine w/ same length
+
+### DIVIDE_GROUP ###
+# Divide Restrictions
+CHILD_SIZE_RANGE 2.0 # Maximal differential between child and parent sizes.
+MIN_COPIED_LINES 0.5 # Code fraction which must be copied before divide.
+MIN_EXE_LINES 0.5 # Code fraction which must be executed before divide.
+REQUIRE_ALLOCATE 1 # (Original CPU Only) Require allocate before divide?
+REQUIRED_TASK -1 # Task ID required for successful divide.
+IMMUNITY_TASK -1 # Task providing immunity from the required task.
+REQUIRED_REACTION -1 # Reaction ID required for successful divide.
+REQUIRED_BONUS 0 # The bonus that an organism must accumulate to divide.
+
+### MUTATION_GROUP ###
+# Mutations
+POINT_MUT_PROB 0.0 # Mutation rate (per-location per update)
+COPY_MUT_PROB 0.0075 # Mutation rate (per copy)
+INS_MUT_PROB 0.0 # Insertion rate (per site, applied on divide)
+DEL_MUT_PROB 0.0 # Deletion rate (per site, applied on divide)
+DIV_MUT_PROB 0.0 # Mutation rate (per site, applied on divide)
+DIVIDE_MUT_PROB 0.0 # Mutation rate (per divide)
+DIVIDE_INS_PROB 0.05 # Insertion rate (per divide)
+DIVIDE_DEL_PROB 0.05 # Deletion rate (per divide)
+PARENT_MUT_PROB 0.0 # Per-site, in parent, on divide
+SPECIAL_MUT_LINE -1 # If this is >= 0, ONLY this line is mutated
+INJECT_INS_PROB 0.0 # Insertion rate (per site, applied on inject)
+INJECT_DEL_PROB 0.0 # Deletion rate (per site, applied on inject)
+INJECT_MUT_PROB 0.0 # Mutation rate (per site, applied on inject)
+META_COPY_MUT 0.0 # Prob. of copy mutation rate changing (per gen)
+META_STD_DEV 0.0 # Standard deviation of meta mutation size.
+MUT_RATE_SOURCE 1 # 1 = Mutation rates determined by environment.
+ # 2 = Mutation rates inherited from parent.
+
+### REVERSION_GROUP ###
+# Mutation Reversion
+# These slow down avida a lot, and should be set to 0.0 normally.
+REVERT_FATAL 0.0 # Should any mutations be reverted on birth?
+REVERT_DETRIMENTAL 0.0 # 0.0 to 1.0; Probability of reversion.
+REVERT_NEUTRAL 0.0 #
+REVERT_BENEFICIAL 0.0 #
+STERILIZE_FATAL 0.0 # Should any mutations clear (kill) the organism?
+STERILIZE_DETRIMENTAL 0.0 #
+STERILIZE_NEUTRAL 0.0 #
+STERILIZE_BENEFICIAL 0.0 #
+FAIL_IMPLICIT 0 # Should copies that failed *not* due to mutations
+ # be eliminated?
+NEUTRAL_MAX 0.0 # The percent benifical change from parent fitness to be considered neutral.
+NEUTRAL_MIN 0.0 # The percent deleterious change from parent fitness to be considered neutral.
+
+### TIME_GROUP ###
+# Time Slicing
+AVE_TIME_SLICE 30 # Ave number of insts per org per update
+SLICING_METHOD 1 # 0 = CONSTANT: all organisms get default...
+ # 1 = PROBABILISTIC: Run _prob_ proportional to merit.
+ # 2 = INTEGRATED: Perfectly integrated deterministic.
+BASE_MERIT_METHOD 4 # 0 = Constant (merit independent of size)
+ # 1 = Merit proportional to copied size
+ # 2 = Merit prop. to executed size
+ # 3 = Merit prop. to full size
+ # 4 = Merit prop. to min of executed or copied size
+ # 5 = Merit prop. to sqrt of the minimum size
+BASE_CONST_MERIT 100 # Base merit when BASE_MERIT_METHOD set to 0
+DEFAULT_BONUS 1.0 # Initial bonus before any tasks
+MERIT_DEFAULT_BONUS 0 # Scale the merit of an offspring by the default bonus
+ # rather than the accumulated bonus of the parent?
+MAX_CPU_THREADS 1 # Number of Threads a CPU can spawn
+THREAD_SLICING_METHOD 0 # Formula for and organism's thread slicing
+ # (num_threads-1) * THREAD_SLICING_METHOD + 1
+ # 0 = One thread executed per time slice.
+ # 1 = All threads executed each time slice.
+MAX_LABEL_EXE_SIZE 1 # Max nops marked as executed when labels are used
+DONATE_SIZE 5.0 # Amount of merit donated with 'donate' command
+DONATE_MULT 10.0 # Multiple of merit given that the target receives.
+MAX_DONATE_KIN_DIST -1 # Limit on distance of relation for donate; -1=no max
+MAX_DONATE_EDIT_DIST -1 # Limit on edit distance for donate; -1=no max
+MAX_DONATES 1000000 # Limit on number of donates organisms are allowed.
+
+### GENEOLOGY_GROUP ###
+# Geneology
+TRACK_MAIN_LINEAGE 1 # Keep all ancestors of the active population?
+ # 0=no, 1=yes, 2=yes,w/sexual population
+THRESHOLD 3 # Number of organisms in a genotype needed for it
+ # to be considered viable.
+GENOTYPE_PRINT 0 # 0/1 (off/on) Print out all threshold genotypes?
+GENOTYPE_PRINT_DOM 0 # Print out a genotype if it stays dominant for
+ # this many updates. (0 = off)
+SPECIES_THRESHOLD 2 # max failure count for organisms to be same species
+SPECIES_RECORDING 0 # 1 = full, 2 = limited search (parent only)
+SPECIES_PRINT 0 # 0/1 (off/on) Print out all species?
+TEST_CPU_TIME_MOD 20 # Time allocated in test CPUs (multiple of length)
+
+### LOG_GROUP ###
+# Log Files
+LOG_CREATURES 0 # 0/1 (off/on) toggle to print file.
+LOG_GENOTYPES 0 # 0 = off, 1 = print ALL, 2 = print threshold ONLY.
+LOG_THRESHOLD 0 # 0/1 (off/on) toggle to print file.
+LOG_SPECIES 0 # 0/1 (off/on) toggle to print file.
+
+### LINEAGE_GROUP ###
+# Lineage
+# NOTE: This should probably be called "Clade"
+# This one can slow down avida a lot. It is used to get an idea of how
+# often an advantageous mutation arises, and where it goes afterwards.
+# Lineage creation options are. Works only when LOG_LINEAGES is set to 1.
+# 0 = manual creation (on inject, use successive integers as lineage labels).
+# 1 = when a child's (potential) fitness is higher than that of its parent.
+# 2 = when a child's (potential) fitness is higher than max in population.
+# 3 = when a child's (potential) fitness is higher than max in dom. lineage
+# *and* the child is in the dominant lineage, or (2)
+# 4 = when a child's (potential) fitness is higher than max in dom. lineage
+# (and that of its own lineage)
+# 5 = same as child's (potential) fitness is higher than that of the
+# currently dominant organism, and also than that of any organism
+# currently in the same lineage.
+# 6 = when a child's (potential) fitness is higher than any organism
+# currently in the same lineage.
+# 7 = when a child's (potential) fitness is higher than that of any
+# organism in its line of descent
+LOG_LINEAGES 0 #
+LINEAGE_CREATION_METHOD 0 #
+
+### ORGANISM_NETWORK_GROUP ###
+# Organism Network Communication
+NET_ENABLED 0 # Enable Network Communication Support
+NET_DROP_PROB 0.0 # Message drop rate
+NET_MUT_PROB 0.0 # Message corruption probability
+NET_MUT_TYPE 0 # Type of message corruption. 0 = Random Single Bit, 1 = Always Flip Last
+NET_STYLE 0 # Communication Style. 0 = Random Next, 1 = Receiver Facing
+
+### BUY_SELL_GROUP ###
+# Buying and Selling Parameters
+SAVE_RECEIVED 0 # Enable storage of all inputs bought from other orgs
+BUY_PRICE 0 # price offered by organisms attempting to buy
+SELL_PRICE 0 # price offered by organisms attempting to sell
+
+### ANALYZE_GROUP ###
+# Analysis Settings
+MT_CONCURRENCY 1 # Number of concurrent analyze threads
+ANALYZE_OPTION_1 # String variable accessible from analysis scripts
+ANALYZE_OPTION_2 # String variable accessible from analysis scripts
+
+### ENERGY_GROUP ###
+# Energy Settings
+ENERGY_ENABLED 1 # Enable Energy Model. 0/1 (off/on)
+ENERGY_GIVEN_ON_INJECT 100000 # Energy given to organism upon injection.
+ENERGY_GIVEN_AT_BIRTH 0.0 # Energy given to offspring upon birth.
+FRAC_PARENT_ENERGY_GIVEN_AT_BIRTH 0.5 # Fraction of energy given to offspring.
+FRAC_ENERGY_DECAY_AT_BIRTH 0.05 # Fraction of energy lost due to decay during reproduction.
+NUM_INST_EXC_BEFORE_0_ENERGY 1000000 # Number of instructions executed before energy is exhausted.
+ENERGY_CAP -1 # Maximun amount of energy that can be stored in an organism. -1 means the cap is set to Max Int
+ENERGY_VERBOSE 0 # Print energy and merit values. 0/1 (off/on)
Added: branches/energy/tests/energy_deme_level_res/config/echo40.org
===================================================================
--- branches/energy/tests/energy_deme_level_res/config/echo40.org (rev 0)
+++ branches/energy/tests/energy_deme_level_res/config/echo40.org 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,42 @@
+h-alloc # Allocate space for child
+h-search # Locate the end of the organism
+nop-C #
+nop-A #
+mov-head # Place write-head at beginning of offspring.
+nop-C #
+IO
+nop-C #
+IO # 1
+nop-C #
+IO # 2
+nop-C #
+IO # 3
+nop-C #
+IO # 4
+nop-C #
+IO # 5
+nop-C #
+IO # 6
+nop-C #
+IO # 7
+nop-C #
+IO # 8
+nop-C #
+IO
+IO # echo 9
+nop-C #
+nand
+IO # nand 1
+IO
+nop-C # echo 10
+nand
+IO # nand 2
+h-search # Mark the beginning of the copy loop
+h-copy # Do the copy
+if-label # If we're done copying....
+nop-C #
+nop-A #
+h-divide # ...divide!
+mov-head # Otherwise, loop back to the beginning of the copy loop.
+nop-A # End label.
+nop-B #
Added: branches/energy/tests/energy_deme_level_res/config/environment-5tasks.cfg
===================================================================
--- branches/energy/tests/energy_deme_level_res/config/environment-5tasks.cfg (rev 0)
+++ branches/energy/tests/energy_deme_level_res/config/environment-5tasks.cfg 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,33 @@
+##############################################################################
+#
+# This is the setup file for the task/resource system. From here, you can
+# setup the available resources (including their inflow and outflow rates) as
+# well as the reactions that the organisms can trigger by performing tasks.
+#
+# This file is currently setup to reward 9 tasks, all of which use the
+# "infinite" resource, which is undepletable.
+#
+# For information on how to use this file, see: doc/environment.html
+# For other sample environments, see: source/support/config/
+#
+##############################################################################
+
+RESOURCE global:initial=1.0:deme=false
+RESOURCE deme_ResA:initial=1.0:deme=true
+RESOURCE deme_ResB:geometry=grid:initial=1000:inflow=1000:outflow=0.1\
+ :deme=true:\
+ inflowx1=0:inflowx2=9:inflowy1=1:inflowy2=1:\
+ outflowx1=0:outflowx2=9:outflowy1=5:outflowy2=5:\
+ xdiffuse=0:ydiffuse=0:xgravity=0:ygravity=0
+
+
+REACTION ECHO echo process:resource=global:value=1000.0:type=energy:frac=1.0:product=global:conversion=2.0 requisite:max_count=10
+
+REACTION NAND nand process:resource=deme_ResA:value=1500.0:type=energy:frac=1.0:product=deme_ResA:conversion=1.5 requisite:max_count=10
+
+
+#REACTION OR or process:value=3.0:type=pow requisite:max_count=1
+#REACTION ANDN andn process:value=3.0:type=pow requisite:max_count=1
+#REACTION NOR nor process:value=4.0:type=pow requisite:max_count=1
+#REACTION XOR xor process:value=4.0:type=pow requisite:max_count=1
+#REACTION EQU equ process:value=5.0:type=pow requisite:max_count=1
Added: branches/energy/tests/energy_deme_level_res/config/events-ConstResource.cfg
===================================================================
--- branches/energy/tests/energy_deme_level_res/config/events-ConstResource.cfg (rev 0)
+++ branches/energy/tests/energy_deme_level_res/config/events-ConstResource.cfg 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,38 @@
+##############################################################################
+#
+# This is the setup file for the events system. From here, you can
+# configure any actions that you want to have happen during the course of
+# an experiment, including setting the times for data collection.
+#
+# basic syntax: [trigger] [start:interval:stop] [action/event] [arguments...]
+#
+# This file is currently setup to record key information every 100 updates.
+#
+# For information on how to use this file, see: doc/events.html
+# For other sample event configurations, see: support/config/
+#
+##############################################################################
+
+
+# Print all of the standard data files...
+u 0:10:end PrintAverageData # Save info about they average genotypes
+u 0:10:end PrintDominantData # Save info about most abundant genotypes
+u 0:10:end PrintStatsData # Collect satistics about entire pop.
+u 0:10:end PrintCountData # Count organisms, genotypes, species, etc.
+u 0:10:end PrintTasksData # Save organisms counts for each task.
+u 0:10:end PrintTimeData # Track time conversion (generations, etc.)
+u 0:10:end PrintResourceData # Track resource abundance.
+
+u 10:10:end PrintTasksExeData # Num. times tasks have been executed.
+
+# Setup the exit time and full population data collection.
+
+u 0:10:end PrintInstructionAbundanceHistogram
+u 0:10:end PrintInstructionData
+u 10:10:end PrintSleepData
+
+u 0:10:end PrintDemeStats
+
+u 20:20:end ReplicateDemes
+
+u 100 exit
\ No newline at end of file
Added: branches/energy/tests/energy_deme_level_res/config/instset-TEST.cfg
===================================================================
--- branches/energy/tests/energy_deme_level_res/config/instset-TEST.cfg (rev 0)
+++ branches/energy/tests/energy_deme_level_res/config/instset-TEST.cfg 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,64 @@
+nop-A 1 1 0 100 # a
+nop-B 1 1 0 100 # b
+nop-C 1 1 0 100 # c
+if-n-equ 1 1 0 100 # d
+if-less 1 1 0 100 # e
+pop 1 1 0 100 # f
+push 1 1 0 100 # g
+swap-stk 1 1 0 100 # h
+swap 1 1 0 100 # i
+shift-r 1 1 0 100 # j
+shift-l 1 1 0 100 # k
+inc 1 1 0 100 # l
+dec 1 1 0 100 # m
+add 1 1 0 100 # n
+sub 1 1 0 100 # o
+nand 1 1 0 100 # p
+IO 1 1 0 100 # q Puts current contents of register and gets new.
+h-alloc 1 1 0 100 # r Allocate as much memory as organism can use.
+h-divide 1 1 0 100 # s Cuts off everything between the read and write heads
+h-copy 1 1 0 100 # t Combine h-read and h-write
+h-search 1 1 0 100 # u Search for matching template, set flow head & return info
+ # # if no template, move flow-head here, set size&offset=0.
+mov-head 1 1 0 100 # v Move ?IP? head to flow control.
+jmp-head 1 1 0 100 # w Move ?IP? head by fixed amount in CX. Set old pos in CX.
+get-head 1 1 0 100 # x Get position of specified head in CX.
+if-label 1 1 0 100 # y
+set-flow 1 1 0 100 # z Move flow-head to address in ?CX?
+
+sense-m100 1 1 0 100
+
+if-equ-0 1 1 0 100
+
+time 1 1 0 100
+
+sleep1 1 10 0 1
+sleep2 1 20 0 1
+sleep3 1 40 0 1
+sleep4 1 80 0 1
+
+
+#adv-head 1
+#jump-f 1
+#jump-b 1
+#call 1
+#return 1
+#if-bit-1 1
+#get 1
+#put 1
+#h-read 1
+#h-write 1
+#set-head 1
+#search-f 1
+#search-b 1
+
+
+# Works on multiple nops: pop push inc dec IO adv-head
+
+# What if we add a new head. Search will return the location of something,
+# and put the new head there. Then set-head will move another head to that
+# point. In the case of the copy loop, it only needs to be set once and
+# this will speed up the code quite a bit!
+
+# Search with no template returns current position (abs line number) in
+# genome.
\ No newline at end of file
Added: branches/energy/tests/energy_deme_level_res/expected/data/average.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/average.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/average.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,30 @@
+# Avida Average Data
+# Thu Aug 9 14:30:59 2007
+# 1: Update
+# 2: Merit
+# 3: Gestation Time
+# 4: Fitness
+# 5: Repro Rate?
+# 6: Size
+# 7: Copied Size
+# 8: Executed Size
+# 9: Abundance
+# 10: Proportion of organisms that gave birth in this update
+# 11: Proportion of Breed True Organisms
+# 12: Genotype Depth
+# 13: Generation
+# 14: Neutral Metric
+# 15: Lineage Label
+# 16: True Replication Rate (based on births/update, time-averaged)
+
+0 39.000000 146.000000 0.000000 0.000000 42.000000 42.000000 39.000000 1.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000
+10 3.00324 146 0.267123 0 42 42 39 4 0.25 0.25 0 2 -1.57458 0 0
+20 1.62323 146.143 0.266864 0 42 42 39 3.5 0.214286 0.214286 0.285714 3.85714 -1.17999 0 0
+30 1.2796 146.585 0.258886 0 41.878 41.4146 37.9512 3.41667 0.268293 0.219512 0.512195 5.63415 -0.530821 0 0
+40 1.16556 145.582 0.261338 0 41.7975 41.2911 38.0759 2.82143 0.253165 0.151899 0.708861 7.50633 -0.774455 0 0
+50 1.07042 147.61 0.262643 0 41.85 41.62 38.68 2.12766 0.17 0.11 0.94 9.55 -1.74667 0 0
+60 1.08003 148.18 0.258777 0 41.96 41.53 38.28 2.5641 0.09 0.09 1.06 11.64 -0.83172 0 0
+70 1.65013 185 0.210811 0 42 42 39 4 0 0 1 12 4.62911 -1 0
+80 1.18109 184.846 0.210987 0 41.9231 42 39 1.85714 0.230769 0.0769231 1.53846 13.7692 5.84963 -1 0
+90 0.69005 179.97 0.216826 0 41.8788 41.9697 38.8182 2.2 0.121212 0.0606061 1.78788 15.2121 5.98539 -1 0
+100 0.749764 183.108 0.21303 0 41.9077 41.9692 38.9231 2.82609 0 0 1.6 17.2 7.0922 -1 0
Added: branches/energy/tests/energy_deme_level_res/expected/data/count.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/count.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/count.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,30 @@
+# Avida count data
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: number of insts executed this update
+# 3: number of organisms
+# 4: number of different genotypes
+# 5: number of different threshold genotypes
+# 6: number of different species
+# 7: number of different threshold species
+# 8: number of different lineages
+# 9: number of births in this update
+# 10: number of deaths in this update
+# 11: number of breed true
+# 12: number of breed true organisms?
+# 13: number of no-birth organisms
+# 14: number of single-threaded organisms
+# 15: number of multi-threaded organisms
+# 16: number of modified organisms
+
+0 30 1 1 1 0 0 0 1 0 1 1 1 1 0 0
+10 90 4 1 1 0 0 0 1 0 1 4 2 4 0 0
+20 330 14 4 1 0 0 0 3 0 3 11 8 14 0 0
+30 990 41 12 2 0 0 0 11 3 9 30 22 41 0 0
+40 2130 79 28 5 0 0 0 20 12 12 55 45 79 0 0
+50 3000 100 47 6 0 0 0 17 17 11 65 58 100 0 0
+60 3000 100 39 10 0 0 0 9 9 9 70 56 100 0 0
+70 120 4 1 2 0 0 0 0 0 0 2 2 4 0 0
+80 300 13 7 2 0 0 0 3 0 1 5 7 13 0 0
+90 870 33 15 4 0 0 0 4 0 2 17 17 33 0 0
+100 1950 65 23 5 0 0 0 0 0 0 44 39 65 0 0
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_donor.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_donor.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_donor.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,17 @@
+# Num orgs doing doing a donate for each deme in population
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Deme 0
+# 3: Deme 1
+
+0 0.000000 0.000000
+10 0 0
+20 0 0
+30 0 0
+40 0 0
+50 0 0
+60 0 0
+70 0 0
+80 0 0
+90 0 0
+100 0 0
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_fitness.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_fitness.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_fitness.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,17 @@
+# Average fitnesses for each deme in the population
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Deme 0
+# 3: Deme 1
+
+0 0.000000 0.000000
+10 0.267123 0
+20 0.266864 0
+30 0.258886 0
+40 0.261338 0
+50 0.262643 0
+60 0.258777 0
+70 0.210811 0.210811
+80 0.211138 0.210811
+90 0.222719 0.210565
+100 0.21522 0.210476
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_gest_time.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_gest_time.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_gest_time.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,17 @@
+# Average gestation time for each deme in population
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Deme 0
+# 3: Deme 1
+
+0 146.000000 0.000000
+10 146 0
+20 146.143 0
+30 146.585 0
+40 145.582 0
+50 147.61 0
+60 148.18 0
+70 185 185
+80 184.714 185
+90 175.588 184.625
+100 181.914 184.5
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_instruction-0.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_instruction-0.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_instruction-0.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,48 @@
+# Number of times each instruction is exectued in deme 0
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Inst 0
+# 3: Inst 1
+# 4: Inst 2
+# 5: Inst 3
+# 6: Inst 4
+# 7: Inst 5
+# 8: Inst 6
+# 9: Inst 7
+# 10: Inst 8
+# 11: Inst 9
+# 12: Inst 10
+# 13: Inst 11
+# 14: Inst 12
+# 15: Inst 13
+# 16: Inst 14
+# 17: Inst 15
+# 18: Inst 16
+# 19: Inst 17
+# 20: Inst 18
+# 21: Inst 19
+# 22: Inst 20
+# 23: Inst 21
+# 24: Inst 22
+# 25: Inst 23
+# 26: Inst 24
+# 27: Inst 25
+# 28: Inst 26
+# 29: Inst 27
+# 30: Inst 28
+# 31: Inst 29
+# 32: Inst 30
+# 33: Inst 31
+# 34: Inst 32
+
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 56 4 4 168 8 168 0 0 168 0 0 0 0 0 0 0 0
+20 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 28 194 14 14 588 28 588 0 0 588 0 2 0 0 0 0 0 0
+30 42 0 8 0 0 0 0 0 0 0 0 0 0 0 0 82 605 41 41 1675 82 1675 0 0 1633 0 6 0 0 0 0 2 0
+40 62 0 38 0 0 0 0 0 0 0 0 2 0 0 0 158 1116 79 79 3239 160 3239 0 0 3177 0 11 2 0 0 0 2 0
+50 21 0 26 1 0 0 2 0 0 1 0 3 0 0 0 200 1372 100 100 4163 206 4162 0 0 4143 0 16 3 2 2 0 5 0
+60 18 0 22 3 0 0 12 0 0 1 0 1 0 1 0 230 1350 100 100 4111 208 4111 0 0 4115 0 17 1 6 1 0 8 0
+70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 26 2 2 84 4 84 0 0 84 0 0 0 0 0 0 2 0
+80 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 14 87 7 7 294 14 294 0 0 294 0 0 0 0 0 0 7 0
+90 0 0 4 0 0 0 4 0 0 0 0 0 0 0 0 34 209 17 17 714 34 714 0 0 714 0 0 4 0 0 0 13 0
+100 0 0 3 0 0 0 6 0 0 0 0 0 0 0 0 70 446 35 35 1473 70 1473 0 0 1473 0 0 3 0 0 0 32 0
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_instruction-1.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_instruction-1.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_instruction-1.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,48 @@
+# Number of times each instruction is exectued in deme 1
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Inst 0
+# 3: Inst 1
+# 4: Inst 2
+# 5: Inst 3
+# 6: Inst 4
+# 7: Inst 5
+# 8: Inst 6
+# 9: Inst 7
+# 10: Inst 8
+# 11: Inst 9
+# 12: Inst 10
+# 13: Inst 11
+# 14: Inst 12
+# 15: Inst 13
+# 16: Inst 14
+# 17: Inst 15
+# 18: Inst 16
+# 19: Inst 17
+# 20: Inst 18
+# 21: Inst 19
+# 22: Inst 20
+# 23: Inst 21
+# 24: Inst 22
+# 25: Inst 23
+# 26: Inst 24
+# 27: Inst 25
+# 28: Inst 26
+# 29: Inst 27
+# 30: Inst 28
+# 31: Inst 29
+# 32: Inst 30
+# 33: Inst 31
+# 34: Inst 32
+
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 26 2 2 84 4 84 0 0 84 0 0 0 0 0 0 2 0
+80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 78 6 6 252 12 252 0 0 252 0 0 0 0 0 0 6 0
+90 0 0 2 2 0 0 0 0 0 4 0 0 0 0 0 32 202 16 16 670 34 668 0 0 668 0 0 0 0 0 0 16 0
+100 0 0 5 2 0 0 0 0 2 6 0 0 0 0 0 60 380 30 30 1255 61 1252 0 0 1252 0 0 0 0 0 0 30 0
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_lifetime_fitness.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_lifetime_fitness.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_lifetime_fitness.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,17 @@
+# Average life fitnesses for each deme in the population
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Deme 0
+# 3: Deme 1
+
+0 0.000000 0.000000
+10 0.267123 0
+20 0.266864 0
+30 0.258886 0
+40 0.261338 0
+50 0.262643 0
+60 0.258777 0
+70 0.210811 0.210811
+80 0.211138 0.210811
+90 0.222719 0.210565
+100 0.21522 0.210476
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_merit.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_merit.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_merit.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,17 @@
+# Average merits for each deme in population
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Deme 0
+# 3: Deme 1
+
+0 39.000000 0.000000
+10 3.00324 0
+20 1.62323 0
+30 1.2796 0
+40 1.16556 0
+50 1.07042 0
+60 1.08003 0
+70 1.65013 1.65013
+80 1.1518 1.21526
+90 0.582945 0.803849
+100 0.859235 0.622047
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_mut_rates.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_mut_rates.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_mut_rates.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,18 @@
+# Average mutation rates for organisms in each deme
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Deme 0
+# 3: Deme 1
+# 4: Average deme mutation rate averaged across Demes.
+
+0 0.007500 0.000000 0.003750
+10 0.0075 0 0.00375
+20 0.0075 0 0.00375
+30 0.0075 0 0.00375
+40 0.0075 0 0.00375
+50 0.0075 0 0.00375
+60 0.0075 0 0.00375
+70 0.0075 0.0075 0.0075
+80 0.0075 0.0075 0.0075
+90 0.0075 0.0075 0.0075
+100 0.0075 0.0075 0.0075
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_receiver.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_receiver.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_receiver.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,17 @@
+# Num orgs doing receiving a donate for each deme in population
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Deme 0
+# 3: Deme 1
+
+0 0.000000 0.000000
+10 0 0
+20 0 0
+30 0 0
+40 0 0
+50 0 0
+60 0 0
+70 0 0
+80 0 0
+90 0 0
+100 0 0
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_resources.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_resources.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_resources.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,19 @@
+# Avida deme resource data
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Deme 0 Resource deme_ResA
+# 3: Deme 0 Resource deme_ResB
+# 4: Deme 1 Resource deme_ResA
+# 5: Deme 1 Resource deme_ResB
+
+0 2.000000 1000.000000 1.000000 1000.000000
+10 7.5 11931.4 1 11931.4
+20 25.5 20912.2 1 20912.2
+30 67.5 30904.2 1 30904.2
+40 176.5 40901.5 1 41901.3
+50 381.5 50900.5 1 50900.5
+60 583 60900.2 1 60900.2
+70 2.5 10934.9 2.5 10934.9
+80 5 20912.2 4.5 20912.2
+90 11.5 30904.2 13.5 30904.2
+100 38.5 40901.5 29.5 40901.5
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_spacial_resource_deme_ResB_0.m
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_spacial_resource_deme_ResB_0.m (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_spacial_resource_deme_ResB_0.m 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,132 @@
+deme_0000000_deme_ResB_0000000 = [ ...
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000010 = [ ...
+10 10 10 10 10 10 10 10 10 10
+1110 1110 1110 1110 1110 1110 1110 1110 1110 1110
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+3.13811 3.13811 3.13811 3.13811 3.13811 3.13811 3.13811 3.13811 3.13811 3.13811
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000020 = [ ...
+10 10 10 10 10 10 10 10 10 10
+2010 2010 2010 2010 2010 2010 2010 2010 2010 2010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000030 = [ ...
+10 10 10 10 10 10 10 10 10 10
+3010 3010 3010 3010 3010 3010 3010 3010 3010 3010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000040 = [ ...
+10 10 10 10 10 10 10 10 10 10
+4010 4010 4010 4010 4010 4010 4010 4010 4010 4010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000050 = [ ...
+10 10 10 10 10 10 10 10 10 10
+5010 5010 5010 5010 5010 5010 5010 5010 5010 5010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000060 = [ ...
+10 10 10 10 10 10 10 10 10 10
+6010 6010 6010 6010 6010 6010 6010 6010 6010 6010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000070 = [ ...
+10 10 10 10 10 10 10 10 10 10
+1010 1010 1010 1010 1010 1010 1010 1010 1010 1010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+3.48678 3.48678 3.48678 3.48678 3.48678 3.48678 3.48678 3.48678 3.48678 3.48678
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000080 = [ ...
+10 10 10 10 10 10 10 10 10 10
+2010 2010 2010 2010 2010 2010 2010 2010 2010 2010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000090 = [ ...
+10 10 10 10 10 10 10 10 10 10
+3010 3010 3010 3010 3010 3010 3010 3010 3010 3010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000000_deme_ResB_0000100 = [ ...
+10 10 10 10 10 10 10 10 10 10
+4010 4010 4010 4010 4010 4010 4010 4010 4010 4010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_spacial_resource_deme_ResB_1.m
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_spacial_resource_deme_ResB_1.m (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_spacial_resource_deme_ResB_1.m 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,132 @@
+deme_0000001_deme_ResB_0000000 = [ ...
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000010 = [ ...
+10 10 10 10 10 10 10 10 10 10
+1110 1110 1110 1110 1110 1110 1110 1110 1110 1110
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+3.13811 3.13811 3.13811 3.13811 3.13811 3.13811 3.13811 3.13811 3.13811 3.13811
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000020 = [ ...
+10 10 10 10 10 10 10 10 10 10
+2010 2010 2010 2010 2010 2010 2010 2010 2010 2010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000030 = [ ...
+10 10 10 10 10 10 10 10 10 10
+3010 3010 3010 3010 3010 3010 3010 3010 3010 3010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000040 = [ ...
+10 10 10 10 10 10 10 10 10 10
+4110 4110 4110 4110 4110 4110 4110 4110 4110 4110
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.133028 0.133028 0.133028 0.133028 0.133028 0.133028 0.133028 0.133028 0.133028 0.133028
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000050 = [ ...
+10 10 10 10 10 10 10 10 10 10
+5010 5010 5010 5010 5010 5010 5010 5010 5010 5010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378 0.0515378
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000060 = [ ...
+10 10 10 10 10 10 10 10 10 10
+6010 6010 6010 6010 6010 6010 6010 6010 6010 6010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701 0.0179701
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000070 = [ ...
+10 10 10 10 10 10 10 10 10 10
+1010 1010 1010 1010 1010 1010 1010 1010 1010 1010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+3.48678 3.48678 3.48678 3.48678 3.48678 3.48678 3.48678 3.48678 3.48678 3.48678
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000080 = [ ...
+10 10 10 10 10 10 10 10 10 10
+2010 2010 2010 2010 2010 2010 2010 2010 2010 2010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577 1.21577
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000090 = [ ...
+10 10 10 10 10 10 10 10 10 10
+3010 3010 3010 3010 3010 3010 3010 3010 3010 3010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912 0.423912
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
+deme_0000001_deme_ResB_0000100 = [ ...
+10 10 10 10 10 10 10 10 10 10
+4010 4010 4010 4010 4010 4010 4010 4010 4010 4010
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809 0.147809
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+10 10 10 10 10 10 10 10 10 10
+];
Added: branches/energy/tests/energy_deme_level_res/expected/data/deme_task.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/deme_task.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/deme_task.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,19 @@
+# Num orgs doing each task for each deme in population
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: Deme 0, Task 0
+# 3: Deme 0, Task 1
+# 4: Deme 1, Task 0
+# 5: Deme 1, Task 1
+
+0 0 0 0 0
+10 4 4 0 0
+20 14 14 0 0
+30 41 41 0 0
+40 79 79 0 0
+50 100 99 0 0
+60 100 100 0 0
+70 2 2 2 2
+80 7 5 6 6
+90 17 13 16 16
+100 35 32 30 30
Added: branches/energy/tests/energy_deme_level_res/expected/data/dominant.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/dominant.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/dominant.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,30 @@
+# Avida Dominant Data
+# Thu Aug 9 14:30:59 2007
+# 1: Update
+# 2: Average Merit of the Dominant Genotype
+# 3: Average Gestation Time of the Dominant Genotype
+# 4: Average Fitness of the Dominant Genotype
+# 5: Repro Rate?
+# 6: Size of Dominant Genotype
+# 7: Copied Size of Dominant Genotype
+# 8: Executed Size of Dominant Genotype
+# 9: Abundance of Dominant Genotype
+# 10: Number of Births
+# 11: Number of Dominant Breed True?
+# 12: Dominant Gene Depth
+# 13: Dominant Breed In
+# 14: Max Fitness?
+# 15: Genotype ID of Dominant Genotype
+# 16: Name of the Dominant Genotype
+
+0 0.000000 0.000000 0.000000 0.000000 42 0.000000 0.000000 1 0 0 0 0 0.000000 1 042-aaaaa
+10 3.70117 146 0.267123 0.00684932 42 42 39 4 1 1 0 0 0.267123 1 042-aaaaa
+20 2.25157 146 0.267123 0.00684932 42 42 39 10 3 3 0 0 0.267123 1 042-aaaaa
+30 1.64186 146 0.267123 0.00684932 42 42 39 25 8 7 0 0 0.267606 1 042-aaaaa
+40 1.3826 146 0.267123 0.00684932 42 42 39 41 16 10 0 0 0.27027 1 042-aaaaa
+50 1.28148 146 0.267123 0.00684932 42 42 39 37 9 6 0 0 0.272727 1 042-aaaaa
+60 1.25257 146 0.267123 0.00684932 42 42 39 31 2 2 0 0 0.27972 1 042-aaaaa
+70 1.30046 185 0.210811 0.00540541 42 42 39 4 0 0 1 0 0.210811 32 042-aaaag
+80 1.26394 185 0.210811 0.00540541 42 42 39 6 2 0 1 0 0.211957 32 042-aaaag
+90 1.18744 185 0.210811 0.00540541 42 42 39 10 3 1 1 0 0.260274 32 042-aaaag
+100 1.09245 185 0.210811 0.00540541 42 42 39 31 0 0 1 0 0.260274 32 042-aaaag
Added: branches/energy/tests/energy_deme_level_res/expected/data/instruction.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/instruction.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/instruction.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,48 @@
+# Avida instruction execution data
+# Thu Aug 9 14:30:59 2007
+# 1: Update
+# 2: nop-A
+# 3: nop-B
+# 4: nop-C
+# 5: if-n-equ
+# 6: if-less
+# 7: pop
+# 8: push
+# 9: swap-stk
+# 10: swap
+# 11: shift-r
+# 12: shift-l
+# 13: inc
+# 14: dec
+# 15: add
+# 16: sub
+# 17: nand
+# 18: IO
+# 19: h-alloc
+# 20: h-divide
+# 21: h-copy
+# 22: h-search
+# 23: mov-head
+# 24: jmp-head
+# 25: get-head
+# 26: if-label
+# 27: set-flow
+# 28: sense-m100
+# 29: if-equ-0
+# 30: time
+# 31: sleep1
+# 32: sleep2
+# 33: sleep3
+# 34: sleep4
+
+0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
+10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 56 4 4 168 8 168 0 0 168 0 0 0 0 0 0 0 0
+20 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 28 194 14 14 588 28 588 0 0 588 0 2 0 0 0 0 0 0
+30 42 0 8 0 0 0 0 0 0 0 0 0 0 0 0 82 605 41 41 1675 82 1675 0 0 1633 0 6 0 0 0 0 2 0
+40 62 0 38 0 0 0 0 0 0 0 0 2 0 0 0 158 1116 79 79 3239 160 3239 0 0 3177 0 11 2 0 0 0 2 0
+50 21 0 26 1 0 0 2 0 0 1 0 3 0 0 0 200 1372 100 100 4163 206 4162 0 0 4143 0 16 3 2 2 0 5 0
+60 18 0 22 3 0 0 12 0 0 1 0 1 0 1 0 230 1350 100 100 4111 208 4111 0 0 4115 0 17 1 6 1 0 8 0
+70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 52 4 4 168 8 168 0 0 168 0 0 0 0 0 0 4 0
+80 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 26 165 13 13 546 26 546 0 0 546 0 0 0 0 0 0 13 0
+90 0 0 6 2 0 0 4 0 0 4 0 0 0 0 0 66 411 33 33 1384 68 1382 0 0 1382 0 0 4 0 0 0 29 0
+100 0 0 8 2 0 0 6 0 2 6 0 0 0 0 0 130 826 65 65 2728 131 2725 0 0 2725 0 0 3 0 0 0 62 0
Added: branches/energy/tests/energy_deme_level_res/expected/data/instruction_histogram.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/instruction_histogram.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/instruction_histogram.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,46 @@
+# 1: Update
+# 2: nop-A
+# 3: nop-B
+# 4: nop-C
+# 5: if-n-equ
+# 6: if-less
+# 7: pop
+# 8: push
+# 9: swap-stk
+# 10: swap
+# 11: shift-r
+# 12: shift-l
+# 13: inc
+# 14: dec
+# 15: add
+# 16: sub
+# 17: nand
+# 18: IO
+# 19: h-alloc
+# 20: h-divide
+# 21: h-copy
+# 22: h-search
+# 23: mov-head
+# 24: jmp-head
+# 25: get-head
+# 26: if-label
+# 27: set-flow
+# 28: sense-m100
+# 29: if-equ-0
+# 30: time
+# 31: sleep1
+# 32: sleep2
+# 33: sleep3
+# 34: sleep4
+
+0 84 1 15 0 0 0 0 0 0 0 0 0 0 0 0 2 14 2 1 1 3 2 0 0 1 0 0 0 0 0 0 0 0
+10 340 4 57 0 0 0 0 0 0 0 0 0 0 0 0 8 56 7 4 4 11 9 0 0 4 0 0 0 0 0 0 0 0
+20 1159 13 201 0 0 0 0 0 0 0 0 0 0 0 0 28 193 42 14 33 35 29 0 0 14 0 2 0 0 0 0 1 0
+30 2711 42 693 0 1 0 0 0 0 0 0 1 0 0 0 95 672 123 44 111 104 98 0 0 45 0 7 3 0 0 0 2 0
+40 5549 81 1421 1 1 0 2 0 0 3 57 5 0 0 2 196 1370 180 90 105 216 195 0 0 94 0 14 4 1 1 0 5 0
+50 7225 100 1731 2 0 1 5 0 0 3 0 5 0 3 1 222 1605 212 106 108 318 255 0 0 111 0 25 5 7 3 4 10 0
+60 6858 99 1824 7 0 0 12 0 0 3 0 2 2 2 3 218 1703 201 100 101 314 261 0 1 107 2 19 2 16 1 5 8 2
+70 283 4 83 0 0 0 0 0 0 0 0 0 0 0 0 9 76 8 4 4 12 12 0 0 4 0 0 0 0 0 0 5 0
+80 968 13 208 2 0 0 3 0 0 2 0 0 0 0 0 30 188 15 15 16 33 28 0 0 15 0 0 1 0 0 0 14 0
+90 1371 34 614 4 1 1 7 1 1 6 0 0 0 0 0 84 559 43 34 44 88 79 1 0 37 1 0 4 0 0 0 40 0
+100 3500 69 1076 2 3 1 7 5 3 6 0 1 0 0 1 141 950 114 62 71 181 161 2 1 68 3 0 4 0 0 0 68 0
Added: branches/energy/tests/energy_deme_level_res/expected/data/resource.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/resource.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/resource.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,18 @@
+# Avida resource data
+# Thu Aug 9 14:30:59 2007
+# First column gives the current update, all further columns give the quantity
+# of the particular resource at that update.
+# 1: Update
+# 2: global
+
+0 11.000000
+10 71
+20 260
+30 743
+40 1927
+50 4122
+60 6173
+70 6233
+80 6392
+90 6658
+100 7475
Added: branches/energy/tests/energy_deme_level_res/expected/data/sleep.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/sleep.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/sleep.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,17 @@
+# Number of organisms sleeping
+
+# total number of organisms sleeping
+# 1: update
+# 2: DemeID 0
+# 3: DemeID 1
+
+10 0 0
+20 0 0
+30 0 0
+40 2 0
+50 3 0
+60 0 0
+70 0 0
+80 5 4
+90 4 1
+100 1 1
Added: branches/energy/tests/energy_deme_level_res/expected/data/stats.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/stats.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/stats.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,26 @@
+# Generic Statistics Data
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: average inferiority (energy)
+# 3: ave probability of any mutations in genome
+# 4: probability of any mutations in dom genome
+# 5: log(average fidelity)
+# 6: log(dominant fidelity)
+# 7: change in number of genotypes
+# 8: genotypic entropy
+# 9: species entropy
+# 10: depth of most reacent coalescence
+# 11: Total number of resamplings this generation
+# 12: Total number of organisms that failed to resample this generation
+
+0 0.000000 0.335790 0.335790 0.409157 0.409157 1 0.000000 0.000000 0 0 0
+10 0 0.33579 0.33579 0.409157 0.409157 0 0 0 0 0 0
+20 0.00097229 0.33579 0.33579 0.409157 0.409157 0 0.895333 0 0 0 0
+30 0.0313234 0.335199 0.33579 0.408267 0.409157 1 1.54797 0 0 0 0
+40 0.021897 0.334808 0.33579 0.407679 0.409157 6 2.19328 0 0 0 0
+50 0.0169143 0.335063 0.33579 0.408062 0.409157 4 2.96231 0 0 0 0
+60 0.0317447 0.335596 0.33579 0.408865 0.409157 -4 2.95743 0 0 0 0
+70 0 0.33579 0.33579 0.409157 0.409157 0 0 0 1 0 0
+80 -0.000835771 0.335417 0.33579 0.408596 0.409157 2 1.63135 0 1 0 0
+90 -0.0281343 0.335202 0.33579 0.408273 0.409157 2 2.33666 0 1 0 0
+100 -0.0104737 0.335343 0.33579 0.408484 0.409157 0 2.24328 0 1 0 0
Added: branches/energy/tests/energy_deme_level_res/expected/data/tasks.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/tasks.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/tasks.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,19 @@
+# Avida tasks data
+# Thu Aug 9 14:30:59 2007
+# First column gives the current update, next columns give the number
+# of organisms that have the particular task as a component of their merit
+# 1: Update
+# 2: Echo
+# 3: Nand
+
+0 0 0
+10 4 4
+20 14 14
+30 41 41
+40 79 79
+50 100 99
+60 100 100
+70 4 4
+80 13 11
+90 33 29
+100 65 62
Added: branches/energy/tests/energy_deme_level_res/expected/data/tasks_exe.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/tasks_exe.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/tasks_exe.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,18 @@
+# Avida tasks execution data
+# Thu Aug 9 14:30:59 2007
+# First column gives the current update, all further columns give the number
+# of times the particular task has been executed this update.
+# 1: Update
+# 2: Echo
+# 3: Nand
+
+10 40 8
+20 138 28
+30 404 79
+40 766 150
+50 957 185
+60 952 190
+70 40 4
+80 128 11
+90 310 29
+100 625 62
Added: branches/energy/tests/energy_deme_level_res/expected/data/time.dat
===================================================================
--- branches/energy/tests/energy_deme_level_res/expected/data/time.dat (rev 0)
+++ branches/energy/tests/energy_deme_level_res/expected/data/time.dat 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,18 @@
+# Avida time data
+# Thu Aug 9 14:30:59 2007
+# 1: update
+# 2: avida time
+# 3: average generation
+# 4: num_executed?
+
+0 0.000000 0.000000 30
+10 1.35371 2 90
+20 5.65499 3.85714 330
+30 12.4792 5.63415 990
+40 20.7063 7.50633 2130
+50 30.0106 9.55 3000
+60 39.4919 11.64 3000
+70 47.7218 12 120
+80 54.8859 13.7692 300
+90 64.8518 15.2121 870
+100 80.1765 17.2 1950
Added: branches/energy/tests/energy_deme_level_res/test_list
===================================================================
--- branches/energy/tests/energy_deme_level_res/test_list (rev 0)
+++ branches/energy/tests/energy_deme_level_res/test_list 2007-08-09 18:08:29 UTC (rev 1918)
@@ -0,0 +1,37 @@
+;--- Begin Test Configuration File (test_list) ---
+[main]
+; Command line arguments to pass to the application
+args =
+
+app = %(default_app)s ; Application path to test
+nonzeroexit = disallow ; Exit code handling (disallow, allow, or require)
+ ; disallow - treat non-zero exit codes as failures
+ ; allow - all exit codes are acceptable
+ ; require - treat zero exit codes as failures, useful
+ ; for creating tests for app error checking
+createdby = Ben Beckmann ; Who created the test
+email = beckma24 at msu.edu ; Email address for the test's creator
+
+[consistency]
+enabled = yes ; Is this test a consistency test?
+long = no ; Is this test a long test?
+
+[performance]
+enabled = no ; Is this test a performance test?
+long = no ; Is this test a long test?
+
+; The following variables can be used in constructing setting values by calling
+; them with %(variable_name)s. For example see 'app' above.
+;
+; builddir
+; cpus
+; default_app
+; mode
+; perf_repeat
+; perf_user_margin
+; perf_wall_margin
+; svn
+; svnmetadir
+; svnversion
+; testdir
+;--- End Test Configuration File ---
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