[Avida-cvs] [avida-svn] r693 - development/documentation/content/using

[ofria@myxo.css.msu.edu]

Author: ofria
Date: 2006-05-19 16:09:24 -0400 (Fri, 19 May 2006)
New Revision: 693

Modified:
   development/documentation/content/using/analyze_mode.html
Log:
Updated list of DETAIL command attributes.


Modified: development/documentation/content/using/analyze_mode.html
===================================================================
--- development/documentation/content/using/analyze_mode.html	2006-05-19 14:02:55 UTC (rev 692)
+++ development/documentation/content/using/analyze_mode.html	2006-05-19 20:09:24 UTC (rev 693)
@@ -464,10 +464,32 @@
 </center>
 
 <p>
- Finally, if an ALIGN is run, one additional format is available:
- <b>alignment</b> (Aligned Sequence)
+If an ALIGN is run, one additional format is available:
+<p>
+<center>
+<table width=95%>
+<tr><td><b>alignment</b> (Aligned Sequence)
+</table>
+</center>
+    
+<p>
+Finally, there are a handful of commands that will automatically perform
+landscapping.  The landscape will only be run once per organism even when
+multiple output variables are used.
+<p>
+<center>
+<table width=95%>
+<tr><td><b>frac_dead</b> (Fraction of Lethal Mutations)</td>
+    <td><b>frac_neg</b> (Fraction of Harmful Mutations)</td></tr>
+<tr><td><b>frac_neut</b> (Fraction of Neutral Mutations)</td>
+    <td><b>frac_pos</b> (Fraction of Beneficial Mutations)</td></tr>
+<tr><td><b>complexity</b> (Physical Complexity of Organism)</td>
+    <td><b>land_fitness</b> (Average Mutation Fitness)</td></tr>
+</table>
+</center>
 
 
+
 <h3>Variables</h3>
 
 <p>