[Avida-cvs] [Avida2-svn] r333 - in trunk: Avida2.xcodeproj source/main

brysonda@myxo.css.msu.edu brysonda at myxo.css.msu.edu
Thu Oct 6 16:30:44 PDT 2005


Author: brysonda
Date: 2005-10-06 19:30:43 -0400 (Thu, 06 Oct 2005)
New Revision: 333

Added:
   trunk/source/main/nGeometry.h
   trunk/source/main/nReaction.h
Removed:
   trunk/source/main/reaction_macros.hh
   trunk/source/main/resource_count_macros.hh
   trunk/source/main/resource_macros.hh
Modified:
   trunk/Avida2.xcodeproj/project.pbxproj
   trunk/source/main/cConfig.h
   trunk/source/main/cEnvironment.cc
   trunk/source/main/cLocalMutations.cc
   trunk/source/main/cMutationLib.cc
   trunk/source/main/cPopulation.cc
   trunk/source/main/cReactionProcess.cc
   trunk/source/main/cResource.cc
   trunk/source/main/cResourceCount.cc
   trunk/source/main/cSpatialCountElem.cc
   trunk/source/main/cSpatialResCount.cc
   trunk/source/main/cStats.cc
   trunk/source/main/cStats.h
   trunk/source/main/nMutation.h
Log:
Finish renaming main/*macros.hh

Modified: trunk/Avida2.xcodeproj/project.pbxproj
===================================================================
--- trunk/Avida2.xcodeproj/project.pbxproj	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/Avida2.xcodeproj/project.pbxproj	2005-10-06 23:30:43 UTC (rev 333)
@@ -474,6 +474,8 @@
 		70B0872B08F5E82D00FC65FE /* cStats.cc */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.cpp; path = cStats.cc; sourceTree = "<group>"; };
 		70B0872C08F5E82D00FC65FE /* cTaskEntry.cc */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.cpp; path = cTaskEntry.cc; sourceTree = "<group>"; };
 		70B0872D08F5E82D00FC65FE /* cTaskLib.cc */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.cpp; path = cTaskLib.cc; sourceTree = "<group>"; };
+		70B0875A08F5EC8900FC65FE /* nGeometry.h */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.c.h; path = nGeometry.h; sourceTree = "<group>"; };
+		70B0875C08F5ECBC00FC65FE /* nReaction.h */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.c.h; path = nReaction.h; sourceTree = "<group>"; };
 		70C1EF4608C393BA00F50912 /* cCodeLabel.cc */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.cpp; path = cCodeLabel.cc; sourceTree = "<group>"; };
 		70C1EF4708C393BA00F50912 /* cCodeLabel.h */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.c.h; path = cCodeLabel.h; sourceTree = "<group>"; };
 		70C1EF5808C3948C00F50912 /* cCPUMemory.cc */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.cpp; path = cCPUMemory.cc; sourceTree = "<group>"; };
@@ -988,9 +990,6 @@
 		DCC310F10762539E008F7A48 /* main_sub.pri */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = main_sub.pri; sourceTree = "<group>"; };
 		DCC311090762539E008F7A48 /* primitive.cc */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.cpp; path = primitive.cc; sourceTree = "<group>"; };
 		DCC3110A0762539E008F7A48 /* primitive.hh */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.h; path = primitive.hh; sourceTree = "<group>"; };
-		DCC3110F0762539E008F7A48 /* reaction_macros.hh */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.h; path = reaction_macros.hh; sourceTree = "<group>"; };
-		DCC3111A0762539E008F7A48 /* resource_count_macros.hh */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.h; path = resource_count_macros.hh; sourceTree = "<group>"; };
-		DCC3111D0762539E008F7A48 /* resource_macros.hh */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = sourcecode.cpp.h; path = resource_macros.hh; sourceTree = "<group>"; };
 		DCC311390762539E008F7A48 /* modules.pri */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = modules.pri; sourceTree = "<group>"; };
 		DCC3114B0762539E008F7A48 /* analyze.cfg */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = analyze.cfg; sourceTree = "<group>"; };
 		DCC3114C0762539E008F7A48 /* CMakeLists.txt */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = CMakeLists.txt; sourceTree = "<group>"; };
@@ -2038,6 +2037,8 @@
 		DCC310040762539D008F7A48 /* main */ = {
 			isa = PBXGroup;
 			children = (
+				70B0875C08F5ECBC00FC65FE /* nReaction.h */,
+				70B0875A08F5EC8900FC65FE /* nGeometry.h */,
 				70B0871E08F5E82D00FC65FE /* cReaction.cc */,
 				70B0871F08F5E82D00FC65FE /* cReactionLib.cc */,
 				70B0872008F5E82D00FC65FE /* cReactionProcess.cc */,
@@ -2172,9 +2173,6 @@
 				DCC310F10762539E008F7A48 /* main_sub.pri */,
 				DCC311090762539E008F7A48 /* primitive.cc */,
 				DCC3110A0762539E008F7A48 /* primitive.hh */,
-				DCC3110F0762539E008F7A48 /* reaction_macros.hh */,
-				DCC3111A0762539E008F7A48 /* resource_count_macros.hh */,
-				DCC3111D0762539E008F7A48 /* resource_macros.hh */,
 				DCC3112E0762539E008F7A48 /* unit_testsuites */,
 				70B085D108F48C9400FC65FE /* nSpecies.h */,
 			);

Modified: trunk/source/main/cConfig.h
===================================================================
--- trunk/source/main/cConfig.h	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cConfig.h	2005-10-06 23:30:43 UTC (rev 333)
@@ -17,6 +17,7 @@
 #ifndef TLIST_HH
 #include "tList.hh"
 #endif
+#include "nGeometry.h"
 
 #define SLICE_CONSTANT         0
 #define SLICE_PROB_MERIT       1
@@ -58,10 +59,6 @@
 #define SIZE_MERIT_LEAST       4
 #define SIZE_MERIT_SQRT_LEAST  5
 
-#define GEOMETRY_GLOBAL 0
-#define GEOMETRY_GRID   1
-#define GEOMETRY_TORUS  2
-
 class cString; // aggregate
 class cStringList; // aggregate
 class cGenesis;

Modified: trunk/source/main/cEnvironment.cc
===================================================================
--- trunk/source/main/cEnvironment.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cEnvironment.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -12,7 +12,7 @@
 #ifndef INIT_FILE_HH
 #include "init_file.hh"
 #endif
-#ifndef MUTATION_MACROS_HH
+#ifndef nMutation_h
 #include "nMutation.h"
 #endif
 #ifndef RANDOM_HH
@@ -21,8 +21,8 @@
 #ifndef REACTION_HH
 #include "cReaction.h"
 #endif
-#ifndef REACTION_MACROS_HH
-#include "reaction_macros.hh"
+#ifndef nReaction_h
+#include "nReaction.h"
 #endif
 #ifndef REACTION_PROCESS_HH
 #include "cReactionProcess.h"
@@ -178,9 +178,9 @@
       new_process->SetValue(var_value.AsDouble());
     }
     else if (var_name == "type") {
-      if (var_value=="add") new_process->SetType(REACTION_PROCTYPE_ADD);
-      else if (var_value=="mult") new_process->SetType(REACTION_PROCTYPE_MULT);
-      else if (var_value=="pow") new_process->SetType(REACTION_PROCTYPE_POW);
+      if (var_value=="add") new_process->SetType(nReaction::PROCTYPE_ADD);
+      else if (var_value=="mult") new_process->SetType(nReaction::PROCTYPE_MULT);
+      else if (var_value=="pow") new_process->SetType(nReaction::PROCTYPE_POW);
       else {
 	cerr << "Unknown reaction process type '" << var_value
 	     << "' found in '" << reaction->GetName() << "'." << endl;
@@ -867,13 +867,13 @@
     double bonus = consumed * cur_process->GetValue() * task_quality;
 
     switch (cur_process->GetType()) {
-    case REACTION_PROCTYPE_ADD:
+    case nReaction::PROCTYPE_ADD:
       result.AddBonus(bonus);
       break;
-    case REACTION_PROCTYPE_MULT:
+    case nReaction::PROCTYPE_MULT:
       result.MultBonus(bonus);
       break;
-    case REACTION_PROCTYPE_POW:
+    case nReaction::PROCTYPE_POW:
       result.MultBonus( pow(2.0, bonus) );
       break;
     default:

Modified: trunk/source/main/cLocalMutations.cc
===================================================================
--- trunk/source/main/cLocalMutations.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cLocalMutations.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -15,7 +15,7 @@
 #ifndef MUTATION_LIB_HH
 #include "cMutationLib.h"
 #endif
-#ifndef MUTATION_MACROS_HH
+#ifndef nMutation_h
 #include "nMutation.h"
 #endif
 

Modified: trunk/source/main/cMutationLib.cc
===================================================================
--- trunk/source/main/cMutationLib.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cMutationLib.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -12,7 +12,7 @@
 #ifndef MUTATION_HH
 #include "cMutation.h"
 #endif
-#ifndef MUTATION_MACROS_HH
+#ifndef nMutation_h
 #include "nMutation.h"
 #endif
 

Modified: trunk/source/main/cPopulation.cc
===================================================================
--- trunk/source/main/cPopulation.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cPopulation.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -89,9 +89,9 @@
   const int num_cells = world_x * world_y;
   cout << "Building world " << world_x << "x" << world_y
     << " = " << num_cells << " organisms." << endl;
-  if (geometry == GEOMETRY_GRID) {
+  if (geometry == nGeometry::GRID) {
     cout << "Geometry: Bounded grid" << endl;
-  } else if (geometry == GEOMETRY_TORUS) {
+  } else if (geometry == nGeometry::TORUS) {
     cout << "Geometry: Torus" << endl;
   } else {
     cout << "Geometry: Unknown" << endl;
@@ -108,22 +108,22 @@
     cell_array[cell_id].Setup(cell_id, default_mut_rates);
     
     
-    if ((y == 0) && (geometry == GEOMETRY_GRID)) {
+    if ((y == 0) && (geometry == nGeometry::GRID)) {
       bottom_flag = false;
     } else {
       bottom_flag = true;
     }
-    if ((y == world_y-1) && (geometry == GEOMETRY_GRID)) {
+    if ((y == world_y-1) && (geometry == nGeometry::GRID)) {
       top_flag = false;
     } else {
       top_flag = true;
     }
-    if ((x == 0) && (geometry == GEOMETRY_GRID)) {
+    if ((x == 0) && (geometry == nGeometry::GRID)) {
       left_flag = false;
     } else {
       left_flag = true;
     }
-    if ((x == world_x-1) && (geometry == GEOMETRY_GRID)) {
+    if ((x == world_x-1) && (geometry == nGeometry::GRID)) {
       right_flag = false;
     } else {
       right_flag = true;

Modified: trunk/source/main/cReactionProcess.cc
===================================================================
--- trunk/source/main/cReactionProcess.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cReactionProcess.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -12,8 +12,8 @@
 #ifndef DEFS_HH
 #include "defs.hh"
 #endif
-#ifndef REACTION_MACROS_HH
-#include "reaction_macros.hh"
+#ifndef nReaction_h
+#include "nReaction.h"
 #endif
 
 //////////////////////
@@ -23,7 +23,7 @@
 cReactionProcess::cReactionProcess()
   : resource(NULL)
   , value(1.0)
-  , type(REACTION_PROCTYPE_ADD)
+  , type(nReaction::PROCTYPE_ADD)
   , max_number(1.0)
   , min_number(0.0)
   , max_fraction(1.0)

Modified: trunk/source/main/cResource.cc
===================================================================
--- trunk/source/main/cResource.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cResource.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -21,7 +21,7 @@
   , initial(0.0)
   , inflow(0.0)
   , outflow(0.0)
-  , geometry(GEOMETRY_GLOBAL)
+  , geometry(nGeometry::GLOBAL)
   , inflowX1(-99)
   , inflowX2(-99)
   , inflowY1(-99)
@@ -41,13 +41,13 @@
 {
      _geometry.ToLower();
      if (_geometry == "global") {
-          geometry = GEOMETRY_GLOBAL;
+          geometry = nGeometry::GLOBAL;
           return true;
      } else if (_geometry == "grid") {
-          geometry = GEOMETRY_GRID;
+          geometry = nGeometry::GRID;
           return true;
      } else if (_geometry == "torus") {
-          geometry = GEOMETRY_TORUS;
+          geometry = nGeometry::TORUS;
           return true;
      } else {
           return false;

Modified: trunk/source/main/cResourceCount.cc
===================================================================
--- trunk/source/main/cResourceCount.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cResourceCount.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -134,7 +134,7 @@
   inflow_rate.SetAll(0.0);
   decay_precalc.SetAll(0.0);
   inflow_precalc.SetAll(0.0);
-  geometry.SetAll(GEOMETRY_GLOBAL);
+  geometry.SetAll(nGeometry::GLOBAL);
   curr_grid_res_cnt.SetAll(0.0);
 }
 
@@ -158,11 +158,11 @@
   assert(spatial_resource_count[id].GetSize() > 0);
 
   cString geo_name;
-  if (in_geometry == GEOMETRY_GLOBAL) {
+  if (in_geometry == nGeometry::GLOBAL) {
     geo_name = "GLOBAL";
-  } else if (in_geometry == GEOMETRY_GRID) {
+  } else if (in_geometry == nGeometry::GRID) {
     geo_name = "GRID";
-  } else if (in_geometry == GEOMETRY_TORUS) {
+  } else if (in_geometry == nGeometry::TORUS) {
     geo_name = "TORUS";
   }
 #if 0
@@ -172,7 +172,7 @@
        << ", decay=" << decay
        << ", inflow=" << inflow
        << endl;
-  if ((in_geometry == GEOMETRY_GRID) || (in_geometry == GEOMETRY_TORUS)) {
+  if ((in_geometry == nGeometry::GRID) || (in_geometry == nGeometry::TORUS)) {
     cerr << "  Inflow rectangle (" << in_inflowX1 
          << "," << in_inflowY1 
          << ") to (" << in_inflowX2 
@@ -247,7 +247,7 @@
   DoUpdates();
 
   for (int i = 0; i < num_resources; i++) {
-    if (geometry[i] == GEOMETRY_GLOBAL) {
+    if (geometry[i] == nGeometry::GLOBAL) {
       curr_grid_res_cnt[i] = resource_count[i];
     } else {
       curr_grid_res_cnt[i] = spatial_resource_count[i].GetAmount(cell_id);
@@ -302,7 +302,7 @@
   assert(resource_count.GetSize() == res_change.GetSize());
 
   for (int i = 0; i < resource_count.GetSize(); i++) {
-    if (geometry[i] == GEOMETRY_GLOBAL) {
+    if (geometry[i] == nGeometry::GLOBAL) {
       resource_count[i] += res_change[i];
       assert(resource_count[i] >= 0.0);
     } else {
@@ -339,7 +339,7 @@
 
   while (num_steps > PRECALC_DISTANCE) {
     for (int i = 0; i < resource_count.GetSize(); i++) {
-      if (geometry[i] == GEOMETRY_GLOBAL) {
+      if (geometry[i] == nGeometry::GLOBAL) {
         resource_count[i] *= decay_precalc(i, PRECALC_DISTANCE);
         resource_count[i] += inflow_precalc(i, PRECALC_DISTANCE);
       }
@@ -348,7 +348,7 @@
   }
 
   for (int i = 0; i < resource_count.GetSize(); i++) {
-    if (geometry[i] == GEOMETRY_GLOBAL) {
+    if (geometry[i] == nGeometry::GLOBAL) {
       resource_count[i] *= decay_precalc(i, num_steps);
       resource_count[i] += inflow_precalc(i, num_steps);
     }
@@ -359,7 +359,7 @@
   while (spatial_update_time >= 1.0) { 
     spatial_update_time -= 1.0;
     for (int i = 0; i < resource_count.GetSize(); i++) {
-      if (geometry[i] != GEOMETRY_GLOBAL) {
+      if (geometry[i] != nGeometry::GLOBAL) {
         spatial_resource_count[i].Source(inflow_rate[i]);
         spatial_resource_count[i].Sink(decay_rate[i]);
         spatial_resource_count[i].FlowAll();

Modified: trunk/source/main/cSpatialCountElem.cc
===================================================================
--- trunk/source/main/cSpatialCountElem.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cSpatialCountElem.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -9,9 +9,7 @@
 #include "cSpatialCountElem.h"
 #endif
 
-#ifndef RESOURCE_COUNT_MACROS_HH
-#include "resource_count_macros.hh"
-#endif
+const int MAXFLOWPTS = 8;
 
 cSpatialCountElem::cSpatialCountElem (double initamount) {
     amount = initamount;

Modified: trunk/source/main/cSpatialResCount.cc
===================================================================
--- trunk/source/main/cSpatialResCount.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cSpatialResCount.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -64,7 +64,7 @@
   ydiffuse = 1.0;
   xgravity = 0.0;
   ygravity = 0.0;
-  geometry = GEOMETRY_GLOBAL;
+  geometry = nGeometry::GLOBAL;
 }
 
 void cSpatialResCount::ResizeClear(int inworld_x, int inworld_y, 
@@ -106,7 +106,7 @@
  
   /* Fix links for top, bottom and sides for non-torus */
   
-  if (geometry == GEOMETRY_GRID) {
+  if (geometry == nGeometry::GRID) {
     /* Top and bottom */
 
     for (i = 0; i < world_x; i++) {

Modified: trunk/source/main/cStats.cc
===================================================================
--- trunk/source/main/cStats.cc	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cStats.cc	2005-10-06 23:30:43 UTC (rev 333)
@@ -710,7 +710,7 @@
   df.Write( GetUpdate(),   "Update");
   for (int i = 0; i < resource_count.GetSize(); i++) {
     df.Write( resource_count[i], resource_names[i] );
-    if (resource_geometry[i] != GEOMETRY_GLOBAL) {
+    if (resource_geometry[i] != nGeometry::GLOBAL) {
       PrintSpatialResData(filename, i);
     }
   }

Modified: trunk/source/main/cStats.h
===================================================================
--- trunk/source/main/cStats.h	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/cStats.h	2005-10-06 23:30:43 UTC (rev 333)
@@ -36,11 +36,8 @@
 #ifndef TDATAMANAGER_HH
 #include "tDataManager.hh"
 #endif
+#include "nGeometry.h"
 
-#define GEOMETRY_GLOBAL 0
-#define GEOMETRY_GRID   1
-#define GEOMETRY_TORUS  2
-
 template <class T> class tDataManager; // aggregate
 class cDataFileManager; // aggregate
 class cDoubleSum; // aggregate

Added: trunk/source/main/nGeometry.h
===================================================================
--- trunk/source/main/nGeometry.h	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/nGeometry.h	2005-10-06 23:30:43 UTC (rev 333)
@@ -0,0 +1,21 @@
+/*
+ *  nGeometry.h
+ *  Avida2
+ *
+ *  Created by David on 10/6/05.
+ *  Copyright 2005 Michigan State University. All rights reserved.
+ *
+ */
+
+#ifndef nGeometry_h
+#define nGeometry_h
+
+namespace nGeometry {
+  enum {
+    GLOBAL = 0,
+    GRID,
+    TORUS
+  };
+}
+
+#endif

Modified: trunk/source/main/nMutation.h
===================================================================
--- trunk/source/main/nMutation.h	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/nMutation.h	2005-10-06 23:30:43 UTC (rev 333)
@@ -1,12 +1,14 @@
-//////////////////////////////////////////////////////////////////////////////
-// Copyright (C) 1993 - 2003 California Institute of Technology             //
-//                                                                          //
-// Read the COPYING and README files, or contact 'avida at alife.org',         //
-// before continuing.  SOME RESTRICTIONS MAY APPLY TO USE OF THIS FILE.     //
-//////////////////////////////////////////////////////////////////////////////
+/*
+ *  nGeometry.h
+ *  Avida2
+ *
+ *  Created by David on 10/5/05.
+ *  Copyright 2005 Michigan State University. All rights reserved.
+ *
+ */
 
-#ifndef MUTATION_MACROS_HH
-#define MUTATION_MACROS_HH
+#ifndef nMutation_h
+#define nMutation_h
 
 namespace nMutation {
   enum {

Copied: trunk/source/main/nReaction.h (from rev 331, trunk/source/main/reaction_macros.hh)
===================================================================
--- trunk/source/main/reaction_macros.hh	2005-10-05 23:40:31 UTC (rev 331)
+++ trunk/source/main/nReaction.h	2005-10-06 23:30:43 UTC (rev 333)
@@ -0,0 +1,21 @@
+/*
+ *  nReaction.h
+ *  Avida2
+ *
+ *  Created by David on 10/6/05.
+ *  Copyright 2005 Michigan State University. All rights reserved.
+ *
+ */
+
+#ifndef nReaction_h
+#define nReaction_h
+
+namespace nReaction {
+  enum {
+    PROCTYPE_ADD = 0,
+    PROCTYPE_MULT,
+    PROCTYPE_POW
+  };
+}
+
+#endif

Deleted: trunk/source/main/reaction_macros.hh
===================================================================
--- trunk/source/main/reaction_macros.hh	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/reaction_macros.hh	2005-10-06 23:30:43 UTC (rev 333)
@@ -1,15 +0,0 @@
-//////////////////////////////////////////////////////////////////////////////
-// Copyright (C) 1993 - 2001 California Institute of Technology             //
-//                                                                          //
-// Read the COPYING and README files, or contact 'avida at alife.org',         //
-// before continuing.  SOME RESTRICTIONS MAY APPLY TO USE OF THIS FILE.     //
-//////////////////////////////////////////////////////////////////////////////
-
-#ifndef REACTION_MACROS_HH
-#define REACTION_MACROS_HH
-
-#define REACTION_PROCTYPE_ADD  0
-#define REACTION_PROCTYPE_MULT 1
-#define REACTION_PROCTYPE_POW  2
-
-#endif

Deleted: trunk/source/main/resource_count_macros.hh
===================================================================
--- trunk/source/main/resource_count_macros.hh	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/resource_count_macros.hh	2005-10-06 23:30:43 UTC (rev 333)
@@ -1,17 +0,0 @@
-//////////////////////////////////////////////////////////////////////////////
-// Copyright (C) 1993 - 2001 California Institute of Technology             //
-//                                                                          //
-// Read the COPYING and README files, or contact 'avida at alife.org',         //
-// before continuing.  SOME RESTRICTIONS MAY APPLY TO USE OF THIS FILE.     //
-//////////////////////////////////////////////////////////////////////////////
-
-#ifndef RESOURCE_COUNT_MACROS_HH
-#define RESOURCE_COUNT_MACROS_HH
-
-#define GEOMETRY_GLOBAL 0
-#define GEOMETRY_GRID   1
-#define GEOMETRY_TORUS  2
-
-#define MAXFLOWPTS 8
-
-#endif

Deleted: trunk/source/main/resource_macros.hh
===================================================================
--- trunk/source/main/resource_macros.hh	2005-10-06 23:02:07 UTC (rev 332)
+++ trunk/source/main/resource_macros.hh	2005-10-06 23:30:43 UTC (rev 333)
@@ -1,15 +0,0 @@
-//////////////////////////////////////////////////////////////////////////////
-// Copyright (C) 1993 - 2003 California Institute of Technology             //
-//                                                                          //
-// Read the COPYING and README files, or contact 'avida at alife.org',         //
-// before continuing.  SOME RESTRICTIONS MAY APPLY TO USE OF THIS FILE.     //
-//////////////////////////////////////////////////////////////////////////////
-
-#ifndef RESOURCE_MACROS_HH
-#define RESOURCE_MACROS_HH
-
-#define GEOMETRY_GLOBAL 0
-#define GEOMETRY_GRID   1
-#define GEOMETRY_TORUS  2
-
-#endif




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