[Avida-cvs] [Avida2-svn] r389 - in development: Avida.xcodeproj source/support
brysonda@myxo.css.msu.edu
brysonda at myxo.css.msu.edu
Thu Nov 10 13:50:26 PST 2005
Author: brysonda
Date: 2005-11-10 16:50:26 -0500 (Thu, 10 Nov 2005)
New Revision: 389
Removed:
development/source/support/genesis.4stack
development/source/support/genesis.smt
Modified:
development/Avida.xcodeproj/project.pbxproj
Log:
Remove old default genesis files.
Modified: development/Avida.xcodeproj/project.pbxproj
===================================================================
--- development/Avida.xcodeproj/project.pbxproj 2005-11-10 21:47:15 UTC (rev 388)
+++ development/Avida.xcodeproj/project.pbxproj 2005-11-10 21:50:26 UTC (rev 389)
@@ -12,8 +12,7 @@
700E2B6F085DE50C00CF158A /* analyze.cfg in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC3114B0762539E008F7A48 /* analyze.cfg */; };
700E2B70085DE50C00CF158A /* environment.cfg in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311800762539F008F7A48 /* environment.cfg */; };
700E2B71085DE50C00CF158A /* events.cfg in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311810762539F008F7A48 /* events.cfg */; };
- 700E2B72085DE50C00CF158A /* genesis in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311820762539F008F7A48 /* genesis */; };
- 700E2B73085DE50C00CF158A /* genesis.4stack in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311830762539F008F7A48 /* genesis.4stack */; };
+ 700E2B73085DE50C00CF158A /* avida-4stack.cfg in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311830762539F008F7A48 /* avida-4stack.cfg */; };
700E2B74085DE50C00CF158A /* inst_set.4stack in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311840762539F008F7A48 /* inst_set.4stack */; };
700E2B75085DE50C00CF158A /* inst_set.default in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311850762539F008F7A48 /* inst_set.default */; };
700E2B76085DE50C00CF158A /* organism.default in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311890762539F008F7A48 /* organism.default */; };
@@ -69,7 +68,7 @@
70486BA00826722F009328F0 /* analyze.cfg in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC3114B0762539E008F7A48 /* analyze.cfg */; };
70486BA10826722F009328F0 /* environment.cfg in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311800762539F008F7A48 /* environment.cfg */; };
70486BA20826722F009328F0 /* events.cfg in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311810762539F008F7A48 /* events.cfg */; };
- 70486BA40826722F009328F0 /* genesis.4stack in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311830762539F008F7A48 /* genesis.4stack */; };
+ 70486BA40826722F009328F0 /* avida-4stack.cfg in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311830762539F008F7A48 /* avida-4stack.cfg */; };
70486BA50826722F009328F0 /* inst_set.4stack in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311840762539F008F7A48 /* inst_set.4stack */; };
70486BA60826722F009328F0 /* inst_set.default in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311850762539F008F7A48 /* inst_set.default */; };
70486BA70826722F009328F0 /* organism.default in CopyFiles */ = {isa = PBXBuildFile; fileRef = DCC311890762539F008F7A48 /* organism.default */; };
@@ -315,8 +314,7 @@
700E2B6F085DE50C00CF158A /* analyze.cfg in CopyFiles */,
700E2B70085DE50C00CF158A /* environment.cfg in CopyFiles */,
700E2B71085DE50C00CF158A /* events.cfg in CopyFiles */,
- 700E2B72085DE50C00CF158A /* genesis in CopyFiles */,
- 700E2B73085DE50C00CF158A /* genesis.4stack in CopyFiles */,
+ 700E2B73085DE50C00CF158A /* avida-4stack.cfg in CopyFiles */,
700E2B74085DE50C00CF158A /* inst_set.4stack in CopyFiles */,
700E2B75085DE50C00CF158A /* inst_set.default in CopyFiles */,
700E2B76085DE50C00CF158A /* organism.default in CopyFiles */,
@@ -341,7 +339,7 @@
70486BA00826722F009328F0 /* analyze.cfg in CopyFiles */,
70486BA10826722F009328F0 /* environment.cfg in CopyFiles */,
70486BA20826722F009328F0 /* events.cfg in CopyFiles */,
- 70486BA40826722F009328F0 /* genesis.4stack in CopyFiles */,
+ 70486BA40826722F009328F0 /* avida-4stack.cfg in CopyFiles */,
70486BA50826722F009328F0 /* inst_set.4stack in CopyFiles */,
70486BA60826722F009328F0 /* inst_set.default in CopyFiles */,
70486BA70826722F009328F0 /* organism.default in CopyFiles */,
@@ -723,8 +721,7 @@
DCC3117F0762539F008F7A48 /* organism.noheads */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = organism.noheads; sourceTree = "<group>"; };
DCC311800762539F008F7A48 /* environment.cfg */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = environment.cfg; sourceTree = "<group>"; };
DCC311810762539F008F7A48 /* events.cfg */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = events.cfg; sourceTree = "<group>"; };
- DCC311820762539F008F7A48 /* genesis */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = genesis; sourceTree = "<group>"; };
- DCC311830762539F008F7A48 /* genesis.4stack */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = genesis.4stack; sourceTree = "<group>"; };
+ DCC311830762539F008F7A48 /* avida-4stack.cfg */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = file; path = "avida-4stack.cfg"; sourceTree = "<group>"; };
DCC311840762539F008F7A48 /* inst_set.4stack */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = inst_set.4stack; sourceTree = "<group>"; };
DCC311850762539F008F7A48 /* inst_set.default */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = inst_set.default; sourceTree = "<group>"; };
DCC311860762539F008F7A48 /* inst_set.sex */ = {isa = PBXFileReference; fileEncoding = 30; lastKnownFileType = text; path = inst_set.sex; sourceTree = "<group>"; };
@@ -1324,8 +1321,7 @@
DCC3114D0762539E008F7A48 /* config */,
DCC311800762539F008F7A48 /* environment.cfg */,
DCC311810762539F008F7A48 /* events.cfg */,
- DCC311820762539F008F7A48 /* genesis */,
- DCC311830762539F008F7A48 /* genesis.4stack */,
+ DCC311830762539F008F7A48 /* avida-4stack.cfg */,
706D33100854A7D700D7DC8F /* genesis.smt */,
DCC311840762539F008F7A48 /* inst_set.4stack */,
DCC311850762539F008F7A48 /* inst_set.default */,
Deleted: development/source/support/genesis.4stack
===================================================================
--- development/source/support/genesis.4stack 2005-11-10 21:47:15 UTC (rev 388)
+++ development/source/support/genesis.4stack 2005-11-10 21:50:26 UTC (rev 389)
@@ -1,166 +0,0 @@
-#############################################################################
-# This file includes all the basic run-time defines for avida.
-# For more information, see doc/genesis.html
-#############################################################################
-
-VERSION_ID 2.3.1 # Do not change this value!
-
-### Architecture Variables ###
-MAX_UPDATES -1 # Maximum updates to run simulation (-1 = no limit)
-MAX_GENERATIONS -1 # Maximum generations to run simulation (-1 = no limit)
-END_CONDITION_MODE 0 # End run when ...
- # 0 = MAX_UPDATES _OR_ MAX_GENERATIONS is reached
- # 1 = MAX_UPDATES _AND_ MAX_GENERATIONS is reached
-WORLD-X 60 # Width of the world in Avida mode.
-WORLD-Y 60 # Height of the world in Avida mode.
-RANDOM_SEED 0 # Random number seed. (0 for based on time)
-HARDWARE_TYPE 1 # 0 = Original CPUs
- # 1 = New, Stack-based CPUs
-MAX_CPU_THREADS 1 # Number of Threads CPUs can spawn
-
-### Configuration Files ###
-DEFAULT_DIR ../work/ # Directory in which config files are found
-INST_SET inst_set.4stack # File containing instruction set
-EVENT_FILE events.cfg # File containing list of events during run
-ANALYZE_FILE analyze.cfg # File used for analysis mode
-ENVIRONMENT_FILE environment.cfg # File that describes the environment
-START_CREATURE organism.4stack # Organism to seed the soup
-
-### Reproduction ###
-BIRTH_METHOD 4 # 0 = Replace random organism in neighborhood
- # 1 = Replace oldest organism in neighborhood
- # 2 = Replace largest Age/Merit in neighborhood
- # 3 = Place only in empty cells in neighborhood
- # 4 = Replace random from entire population (Mass Action)
- # 5 = Replace oldest in entire population (like Tierra)
-DEATH_METHOD 0 # 0 = Never die of old age.
- # 1 = Die when inst executed = AGE_LIMIT (with deviation)
- # 2 = Die when inst executed = length * AGE_LIMIT (+ dev.)
-AGE_LIMIT 20 # Modifies DEATH_METHOD
-AGE_DEVIATION 0 # Modified DEATH_METHOD
-ALLOC_METHOD 0 # 0 = Allocated space is set to default instruction.
- # 1 = Set to section of dead genome (Necrophilia)
- # 2 = Allocated space is set to random instruction.
-DIVIDE_METHOD 2 # 0 = Divide leaves state of mother untouched.
- # 1 = Divide resets state of mother
- # (after the divide, we have 2 children)
- # 2 = Divide resets only the current thread of the mother
- # (useful in 4-stack CPU w/ parasites)
-
-GENERATION_INC_METHOD 0 # 0 = Only the generation of the child is
- # increased on divide.
- # 1 = Both the generation of the mother and child are
- # increased on divide (good with DIVIDE_METHOD 1).
-
-### Divide Restrictions ####
-CHILD_SIZE_RANGE 2.0 # Maximal differential between child and parent sizes.
-MIN_COPIED_LINES 0.5 # Code fraction which must be copied before divide.
-MIN_EXE_LINES 0.5 # Code fraction which must be executed before divide.
-REQUIRE_ALLOCATE 1 # Is a an allocate required before a divide? (0/1)
-REQUIRED_TASK -1 # Number of task required for successful divide.
-
-### Mutations ###
-
-# mutations that occur during execution..
-POINT_MUT_PROB 0.0 # Mutation rate (per-location per update)
-COPY_MUT_PROB 0.0075 # Mutation rate (per copy).
-
-# mutations that occur on divide...
-INS_MUT_PROB 0.0 # Insertion rate (per site, applied on divide).
-DEL_MUT_PROB 0.0 # Deletion rate (per site, applied on divide).
-DIV_MUT_PROB 0.0 # Mutation rate (per site, applied on divide).
-DIVIDE_MUT_PROB 0.0 # Mutation rate (per divide).
-DIVIDE_INS_PROB 0.05 # Insertion rate (per divide).
-DIVIDE_DEL_PROB 0.05 # Deletion rate (per divide).
-PARENT_MUT_PROB 0.0 # Per-site, in parent, on divide
-
-# heads based mutations
-# READ_SHIFT_PROB 0.0
-# READ INS_PROB 0.0
-# READ_DEL_PROB 0.0
-# WRITE_SHIFT_PROB 0.0
-# WRITE_INS_PROB 0.0
-# WRITE_DEL_PROB 0.0
-
-
-### Mutation reversions ###
-# these slow down avida a lot, and should be set to 0 normally.
-REVERT_FATAL 0.0 # Should any mutations be reverted on birth?
-REVERT_DETRIMENTAL 0.0 # 0.0 to 1.0; Probability of reversion.
-REVERT_NEUTRAL 0.0
-REVERT_BENEFICIAL 0.0
-
-STERILIZE_FATAL 0.0 # Should any mutations clear (kill) the organism?
-STERILIZE_DETRIMENTAL 0.0 # 0.0 to 1.0; Probability of reset.
-STERILIZE_NEUTRAL 0.0
-STERILIZE_BENEFICIAL 0.0
-
-FAIL_IMPLICIT 0 # Should copies that failed *not* due to mutations
- # be eliminated?
-
-### Time Slicing ###
-AVE_TIME_SLICE 30
-SLICING_METHOD 2 # 0 = CONSTANT: all organisms get default...
- # 1 = PROBABILISTIC: Run _prob_ proportional to merit.
- # 2 = INTEGRATED: Perfectly integrated deterministic.
-SIZE_MERIT_METHOD 4 # 0 = off (merit is independent of size)
- # 1 = Merit proportional to copied size
- # 2 = Merit prop. to executed size
- # 3 = Merit prop. to full size
- # 4 = Merit prop. to min of executed or copied size
- # 5 = Merit prop. to sqrt of the minimum size
-TASK_MERIT_METHOD 1 # 0 = No task bonuses
- # 1 = Bonus just equals the task bonus
-THREAD_SLICING_METHOD 1 # 0 = One thread executed per time slice.
- # 1 = All threads executed each time slice.
- # Formula for an organism's thread slicing:
- # 1 + (num_organism_threads-1) * THREAD_SLICING_METHOD
-
-MAX_LABEL_EXE_SIZE 1 # Max nops marked as executed when labels are used
-MERIT_TIME 1 # 0 = Merit Calculated when task completed
- # 1 = Merit Calculated on Divide
-MAX_NUM_TASKS_REWARDED -1 # -1 = Unlimited
-
-### Genotype Info ###
-THRESHOLD 3 # Number of organisms in a genotype needed for it
- # to be considered viable.
-GENOTYPE_PRINT 0 # 0/1 (off/on) Print out all threshold genotypes?
-GENOTYPE_PRINT_DOM 0 # Print out a genotype if it stays dominant for
- # this many updates. (0 = off)
-SPECIES_THRESHOLD 2 # max failure count for organisms to be same species
-SPECIES_RECORDING 0 # 1 = full, 2 = limited search (parent only)
-SPECIES_PRINT 0 # 0/1 (off/on) Print out all species?
-TEST_CPU_TIME_MOD 20 # Time allocated in test CPUs (multiple of length)
-TRACK_MAIN_LINEAGE 1 # Track primary lineage leading to final population?
-
-### Log Files ###
-LOG_CREATURES 0 # 0/1 (off/on) toggle to print file.
-LOG_GENOTYPES 0 # 0 = off, 1 = print ALL, 2 = print threshold ONLY.
-LOG_THRESHOLD 0 # 0/1 (off/on) toggle to print file.
-LOG_SPECIES 0 # 0/1 (off/on) toggle to print file.
-
-LOG_LINEAGES 0 # 0/1 (off/on) to log advantageous mutations
-# This one can slow down avida a lot. It is used to get an idea of how
-# often an advantageous mutation arises, and where it goes afterwards.
-# See also LINEAGE_CREATION_METHOD.
-
-LINEAGE_CREATION_METHOD 0
-# Lineage creation options are. Works only when LOG_LINEAGES is set to 1.
-# 0 = manual creation (on inject, use successive integers as lineage labels).
-# 1 = when a child's (potential) fitness is higher than that of its parent.
-# 2 = when a child's (potential) fitness is higher than max in population.
-# 3 = when a child's (potential) fitness is higher than max in dom. lineage
-# *and* the child is in the dominant lineage, or (2)
-# 4 = when a child's (potential) fitness is higher than max in dom. lineage
-# (and that of its own lineage)
-# 5 = same as child's (potential) fitness is higher than that of the
-# currently dominant organism, and also than that of any organism
-# currently in the same lineage.
-# 6 = when a child's (potential) fitness is higher than any organism
-# currently in the same lineage.
-# 7 = when a child's (potential) fitness is higher than that of any
-# organism in its line of descent
-
-### END ###
-
-
Deleted: development/source/support/genesis.smt
===================================================================
--- development/source/support/genesis.smt 2005-11-10 21:47:15 UTC (rev 388)
+++ development/source/support/genesis.smt 2005-11-10 21:50:26 UTC (rev 389)
@@ -1,167 +0,0 @@
-#############################################################################
-# This file includes all the basic run-time defines for avida.
-# For more information, see doc/genesis.html
-#############################################################################
-
-VERSION_ID 2.3.1 # Do not change this value!
-
-### Architecture Variables ###
-MAX_UPDATES -1 # Maximum updates to run simulation (-1 = no limit)
-MAX_GENERATIONS -1 # Maximum generations to run simulation (-1 = no limit)
-END_CONDITION_MODE 0 # End run when ...
- # 0 = MAX_UPDATES _OR_ MAX_GENERATIONS is reached
- # 1 = MAX_UPDATES _AND_ MAX_GENERATIONS is reached
-WORLD-X 60 # Width of the world in Avida mode.
-WORLD-Y 60 # Height of the world in Avida mode.
-RANDOM_SEED 0 # Random number seed. (0 for based on time)
-HARDWARE_TYPE 2 # 0 = Original CPUs
- # 1 = New, Stack-based CPUs
- # 2 = Newer -- Stacks, Memory, Threading
-MAX_CPU_THREADS 1 # Number of Threads CPUs can spawn
-
-### Configuration Files ###
-DEFAULT_DIR ../Avida.work/ # Directory in which config files are found
-INST_SET inst_set.smt # File containing instruction set
-EVENT_FILE events.cfg # File containing list of events during run
-ANALYZE_FILE analyze.cfg # File used for analysis mode
-ENVIRONMENT_FILE environment.cfg # File that describes the environment
-START_CREATURE organism.smt # Organism to seed the soup
-
-### Reproduction ###
-BIRTH_METHOD 4 # 0 = Replace random organism in neighborhood
- # 1 = Replace oldest organism in neighborhood
- # 2 = Replace largest Age/Merit in neighborhood
- # 3 = Place only in empty cells in neighborhood
- # 4 = Replace random from entire population (Mass Action)
- # 5 = Replace oldest in entire population (like Tierra)
-DEATH_METHOD 2 # 0 = Never die of old age.
- # 1 = Die when inst executed = AGE_LIMIT (with deviation)
- # 2 = Die when inst executed = length * AGE_LIMIT (+ dev.)
-AGE_LIMIT 20 # Modifies DEATH_METHOD
-AGE_DEVIATION 0 # Modified DEATH_METHOD
-ALLOC_METHOD 0 # 0 = Allocated space is set to default instruction.
- # 1 = Set to section of dead genome (Necrophilia)
- # 2 = Allocated space is set to random instruction.
-DIVIDE_METHOD 1 # 0 = Divide leaves state of mother untouched.
- # 1 = Divide resets state of mother
- # (after the divide, we have 2 children)
- # 2 = Divide resets only the current thread of the mother
- # (useful in 4-stack CPU w/ parasites)
-
-GENERATION_INC_METHOD 1 # 0 = Only the generation of the child is
- # increased on divide.
- # 1 = Both the generation of the mother and child are
- # increased on divide (good with DIVIDE_METHOD 1).
-
-### Divide Restrictions ####
-CHILD_SIZE_RANGE 2.0 # Maximal differential between child and parent sizes.
-MIN_COPIED_LINES 0.5 # Code fraction which must be copied before divide.
-MIN_EXE_LINES 0.5 # Code fraction which must be executed before divide.
-REQUIRE_ALLOCATE 1 # Is a an allocate required before a divide? (0/1)
-REQUIRED_TASK -1 # Number of task required for successful divide.
-
-### Mutations ###
-
-# mutations that occur during execution..
-POINT_MUT_PROB 0.0 # Mutation rate (per-location per update)
-COPY_MUT_PROB 0.0075 # Mutation rate (per copy).
-
-# mutations that occur on divide...
-INS_MUT_PROB 0.0 # Insertion rate (per site, applied on divide).
-DEL_MUT_PROB 0.0 # Deletion rate (per site, applied on divide).
-DIV_MUT_PROB 0.0 # Mutation rate (per site, applied on divide).
-DIVIDE_MUT_PROB 0.0 # Mutation rate (per divide).
-DIVIDE_INS_PROB 0.05 # Insertion rate (per divide).
-DIVIDE_DEL_PROB 0.05 # Deletion rate (per divide).
-PARENT_MUT_PROB 0.0 # Per-site, in parent, on divide
-
-# heads based mutations
-# READ_SHIFT_PROB 0.0
-# READ INS_PROB 0.0
-# READ_DEL_PROB 0.0
-# WRITE_SHIFT_PROB 0.0
-# WRITE_INS_PROB 0.0
-# WRITE_DEL_PROB 0.0
-
-
-### Mutation reversions ###
-# these slow down avida a lot, and should be set to 0 normally.
-REVERT_FATAL 0.0 # Should any mutations be reverted on birth?
-REVERT_DETRIMENTAL 0.0 # 0.0 to 1.0; Probability of reversion.
-REVERT_NEUTRAL 0.0
-REVERT_BENEFICIAL 0.0
-
-STERILIZE_FATAL 0.0 # Should any mutations clear (kill) the organism?
-STERILIZE_DETRIMENTAL 0.0 # 0.0 to 1.0; Probability of reset.
-STERILIZE_NEUTRAL 0.0
-STERILIZE_BENEFICIAL 0.0
-
-FAIL_IMPLICIT 0 # Should copies that failed *not* due to mutations
- # be eliminated?
-
-### Time Slicing ###
-AVE_TIME_SLICE 30
-SLICING_METHOD 2 # 0 = CONSTANT: all organisms get default...
- # 1 = PROBABILISTIC: Run _prob_ proportional to merit.
- # 2 = INTEGRATED: Perfectly integrated deterministic.
-SIZE_MERIT_METHOD 4 # 0 = off (merit is independent of size)
- # 1 = Merit proportional to copied size
- # 2 = Merit prop. to executed size
- # 3 = Merit prop. to full size
- # 4 = Merit prop. to min of executed or copied size
- # 5 = Merit prop. to sqrt of the minimum size
-TASK_MERIT_METHOD 1 # 0 = No task bonuses
- # 1 = Bonus just equals the task bonus
-THREAD_SLICING_METHOD 1 # 0 = One thread executed per time slice.
- # 1 = All threads executed each time slice.
- # Formula for an organism's thread slicing:
- # 1 + (num_organism_threads-1) * THREAD_SLICING_METHOD
-
-MAX_LABEL_EXE_SIZE 1 # Max nops marked as executed when labels are used
-MERIT_TIME 1 # 0 = Merit Calculated when task completed
- # 1 = Merit Calculated on Divide
-MAX_NUM_TASKS_REWARDED -1 # -1 = Unlimited
-
-### Genotype Info ###
-THRESHOLD 3 # Number of organisms in a genotype needed for it
- # to be considered viable.
-GENOTYPE_PRINT 0 # 0/1 (off/on) Print out all threshold genotypes?
-GENOTYPE_PRINT_DOM 0 # Print out a genotype if it stays dominant for
- # this many updates. (0 = off)
-SPECIES_THRESHOLD 2 # max failure count for organisms to be same species
-SPECIES_RECORDING 0 # 1 = full, 2 = limited search (parent only)
-SPECIES_PRINT 0 # 0/1 (off/on) Print out all species?
-TEST_CPU_TIME_MOD 20 # Time allocated in test CPUs (multiple of length)
-TRACK_MAIN_LINEAGE 1 # Track primary lineage leading to final population?
-
-### Log Files ###
-LOG_CREATURES 0 # 0/1 (off/on) toggle to print file.
-LOG_GENOTYPES 0 # 0 = off, 1 = print ALL, 2 = print threshold ONLY.
-LOG_THRESHOLD 0 # 0/1 (off/on) toggle to print file.
-LOG_SPECIES 0 # 0/1 (off/on) toggle to print file.
-
-LOG_LINEAGES 0 # 0/1 (off/on) to log advantageous mutations
-# This one can slow down avida a lot. It is used to get an idea of how
-# often an advantageous mutation arises, and where it goes afterwards.
-# See also LINEAGE_CREATION_METHOD.
-
-LINEAGE_CREATION_METHOD 0
-# Lineage creation options are. Works only when LOG_LINEAGES is set to 1.
-# 0 = manual creation (on inject, use successive integers as lineage labels).
-# 1 = when a child's (potential) fitness is higher than that of its parent.
-# 2 = when a child's (potential) fitness is higher than max in population.
-# 3 = when a child's (potential) fitness is higher than max in dom. lineage
-# *and* the child is in the dominant lineage, or (2)
-# 4 = when a child's (potential) fitness is higher than max in dom. lineage
-# (and that of its own lineage)
-# 5 = same as child's (potential) fitness is higher than that of the
-# currently dominant organism, and also than that of any organism
-# currently in the same lineage.
-# 6 = when a child's (potential) fitness is higher than any organism
-# currently in the same lineage.
-# 7 = when a child's (potential) fitness is higher than that of any
-# organism in its line of descent
-
-### END ###
-
-
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