[avida-cvs] avida CVS commits: /current/doc analyze_mode.html

[dule123]

dule123		Sat Oct 11 09:34:30 2003 EDT

  Modified files:              
    /avida/current/doc	analyze_mode.html 
  Log:
  
  Added some info about the new AVERAGE_MODULARITY analyze command to the 
  documentation files.  
  
  
  
Index: avida/current/doc/analyze_mode.html
diff -u avida/current/doc/analyze_mode.html:1.3 avida/current/doc/analyze_mode.html:1.4
--- avida/current/doc/analyze_mode.html:1.3	Sat May 24 16:19:14 2003
+++ avida/current/doc/analyze_mode.html	Sat Oct 11 09:34:30 2003
@@ -234,6 +234,15 @@
         The cells in the chart indicate the fitness were a mutation to
         occur at the position in the matrix, to the listed instruction.
         If the "html" flag is used, the charts will be output in HTML format.
+<tr><td><b>AVERAGE_MODULATITY [<font color="#008800">file="modularity.dat"</font>]
+	[<font color="#008800">task.0 task.1 task.2 task.3 task.4 task.5      
+	task.6 task.7 task.8</font>] </b><br>
+    	Calculate several modularity measuers, such as how many tasks is an 
+	instruction involved in, number of sites required for each task, etc.
+	The measures are averaged over all the organisms in the current batch 
+	that perform any tasks. For the full output list, do 
+	"AVERAGE_MODULATITY legend.dat" At the moment doesn't support html
+	output format and works with only 1 and 2 input tasks. 
 <tr><td><b>HAMMING [<font color="#008800">file="hamming.dat"</font>]
 	[<font color="#008800">b1=current</font>]
 	[<font color="#008800">b2=b1</font>] </b><br>
@@ -375,4 +384,4 @@
 <br><hr>
 Project hosted by:<br>
 <a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
-    
\ No newline at end of file
+