[avida-cvs] avida CVS commits: /current/doc analyze_mode.html analyze_samples.html code_c++_intro.html code_death_birth.html code_environment.html code_events.html code_genesis.html code_genome.html code_init_file.html code_instruction.html code_life_cycle.html code_task.html cpu_tour.html cvs.html devel.html environment.html events.html genesis.html index.html inst_set.html level_map.html print_data.html screen.html structure.html
mercere99
avida-cvs at alife.org
Sun May 25 00:19:15 PDT 2003
mercere99 Sat May 24 16:19:15 2003 EDT
Modified files:
/avida/current/doc analyze_mode.html analyze_samples.html
code_c++_intro.html code_death_birth.html
code_environment.html code_events.html
code_genesis.html code_genome.html
code_init_file.html code_instruction.html
code_life_cycle.html code_task.html
cpu_tour.html cvs.html devel.html
environment.html events.html genesis.html
index.html inst_set.html level_map.html
print_data.html screen.html structure.html
Log:
Minor tweeks to documentation. Added a "Project hosted by Sourceforge.net"
to the end of each html file. Next step is to include them in on the web
page.
-------------- next part --------------
Index: avida/current/doc/analyze_mode.html
diff -u avida/current/doc/analyze_mode.html:1.2 avida/current/doc/analyze_mode.html:1.3
--- avida/current/doc/analyze_mode.html:1.2 Wed Aug 7 20:47:03 2002
+++ avida/current/doc/analyze_mode.html Sat May 24 16:19:14 2003
@@ -371,3 +371,8 @@
Currently there are no conditionals or mathematical commands in this
scripting language. These are both planned for the future.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/analyze_samples.html
diff -u avida/current/doc/analyze_samples.html:1.1 avida/current/doc/analyze_samples.html:1.2
--- avida/current/doc/analyze_samples.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/analyze_samples.html Sat May 24 16:19:14 2003
@@ -317,3 +317,8 @@
the section "Working with Batches" above such that you now only need to
work within a single batch.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_c++_intro.html
diff -u avida/current/doc/code_c++_intro.html:1.1 avida/current/doc/code_c++_intro.html:1.2
--- avida/current/doc/code_c++_intro.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/code_c++_intro.html Sat May 24 16:19:14 2003
@@ -1,10 +1,5 @@
-<!doctype html public "-//w3c//dtd html 4.0 transitional//en">
-<html>
-<head>
- <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
- <meta name="GENERATOR" content="Mozilla/4.77 [en] (X11; U; Linux 2.4.3-20mdk i686) [Netscape]">
- <title>An Introduction to C++</title>
-</head>
+<title>An Introduction to C++</title>
+
<body text="#000000" bgcolor="#FFFFFF" link="#0000AA" vlink="#000044" alink="#0000FF">
<center>
@@ -397,5 +392,7 @@
Terms</a></li>
</menu>
-</body>
-</html>
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_death_birth.html
diff -u avida/current/doc/code_death_birth.html:1.1 avida/current/doc/code_death_birth.html:1.2
--- avida/current/doc/code_death_birth.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/code_death_birth.html Sat May 24 16:19:14 2003
@@ -394,3 +394,8 @@
<p>
If the found list ends with more than one candidate cell in it, the one used
is selected randomly from the options available.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_environment.html
diff -u avida/current/doc/code_environment.html:1.2 avida/current/doc/code_environment.html:1.3
--- avida/current/doc/code_environment.html:1.2 Thu May 8 11:39:44 2003
+++ avida/current/doc/code_environment.html Sat May 24 16:19:14 2003
@@ -297,3 +297,8 @@
if the reactions requisites have been met. And finally the
<font color="#000088">resource_count</font> available to the organisms is
needed to determine how much of each resource can be used in the reactions.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_events.html
diff -u avida/current/doc/code_events.html:1.1 avida/current/doc/code_events.html:1.2
--- avida/current/doc/code_events.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/code_events.html Sat May 24 16:19:14 2003
@@ -335,3 +335,8 @@
you're goal is to kill the organism (if one exists) in the specified cell.
For help with how to do this, take a look at the <tt>apocalypse</tt> event,
which causes a larger scale extinction.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_genesis.html
diff -u avida/current/doc/code_genesis.html:1.1 avida/current/doc/code_genesis.html:1.2
--- avida/current/doc/code_genesis.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/code_genesis.html Sat May 24 16:19:14 2003
@@ -177,3 +177,8 @@
<p>
<b>6. Use the variable wherever you need it!</b> :
Your new variable is ready for you. Use it wisely.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_genome.html
diff -u avida/current/doc/code_genome.html:1.1 avida/current/doc/code_genome.html:1.2
--- avida/current/doc/code_genome.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/code_genome.html Sat May 24 16:19:14 2003
@@ -372,3 +372,8 @@
<p>
Finally, three static methods are included to provide access to the
three pre-defined instructions.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_init_file.html
diff -u avida/current/doc/code_init_file.html:1.1 avida/current/doc/code_init_file.html:1.2
--- avida/current/doc/code_init_file.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/code_init_file.html Sat May 24 16:19:14 2003
@@ -326,3 +326,8 @@
So how do we use this cGenesis class to load in and make use of
the initialization file by the same name? For that, you'll need to read
about the cConfig class in the next document.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_instruction.html
diff -u avida/current/doc/code_instruction.html:1.2 avida/current/doc/code_instruction.html:1.3
--- avida/current/doc/code_instruction.html:1.2 Sat Feb 8 11:17:50 2003
+++ avida/current/doc/code_instruction.html Sat May 24 16:19:14 2003
@@ -272,10 +272,11 @@
more "correct" code.
</table>
-<h3>Homework</h3>
+<h3>Problem</h3>
<p>
-For your homework, you will be writing two new instructions in avida. The
+To test your understanding of adding instruction into avida, try writing two
+new instructions. The
first one is the mathematical instruction "<b><tt>cube</tt></b>" which will
take the ?BX? register, and put its value to the third power. If you look
in the actual source files, you will see that there is already a
@@ -292,3 +293,8 @@
For both of these instruction make sure to craft an organism to test that
they are working properly! Turn in this organism (or organisms) to me along
with the source code when you finish the assignment.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_life_cycle.html
diff -u avida/current/doc/code_life_cycle.html:1.1 avida/current/doc/code_life_cycle.html:1.2
--- avida/current/doc/code_life_cycle.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/code_life_cycle.html Sat May 24 16:19:14 2003
@@ -276,3 +276,8 @@
each other and have more interactions with the environment. In a
multi-threaded model, organisms will be doing many activities at the same
time.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/code_task.html
diff -u avida/current/doc/code_task.html:1.1 avida/current/doc/code_task.html:1.2
--- avida/current/doc/code_task.html:1.1 Sat Feb 8 11:17:50 2003
+++ avida/current/doc/code_task.html Sat May 24 16:19:14 2003
@@ -104,4 +104,8 @@
<h3>4. Some advanced features...</h3>
[ This section to be written soon! ]
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
Index: avida/current/doc/cpu_tour.html
diff -u avida/current/doc/cpu_tour.html:1.1 avida/current/doc/cpu_tour.html:1.2
--- avida/current/doc/cpu_tour.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/cpu_tour.html Sat May 24 16:19:14 2003
@@ -356,4 +356,8 @@
<td bgcolor="#FFBBBB">Y <td bgcolor="#FFBBBB">Z <td bgcolor="#FFBBBB">~X
<td bgcolor="#AAFFAA">? <td bgcolor="#FFFF88"> X or Y
</table>
-</center>
\ No newline at end of file
+</center>
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/cvs.html
diff -u avida/current/doc/cvs.html:1.1 avida/current/doc/cvs.html:1.2
--- avida/current/doc/cvs.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/cvs.html Sat May 24 16:19:14 2003
@@ -180,4 +180,8 @@
<p>
For more information on the CVS, see this
-<a href="http://wwwinfo.cern.ch/asd/cvs/tutorial/cvs_tutorial_toc.html">tutorial</a>
\ No newline at end of file
+<a href="http://wwwinfo.cern.ch/asd/cvs/tutorial/cvs_tutorial_toc.html">tutorial</a>
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/devel.html
diff -u avida/current/doc/devel.html:1.1 avida/current/doc/devel.html:1.2
--- avida/current/doc/devel.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/devel.html Sat May 24 16:19:14 2003
@@ -116,3 +116,8 @@
The viewer has problems showing up properly on some systems, if it doesn't
work for you, you can always just run avida in "primitive" move by typing
"<tt>primitive</tt>" instead of "<tt>viewer</tt>".
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/environment.html
diff -u avida/current/doc/environment.html:1.2 avida/current/doc/environment.html:1.3
--- avida/current/doc/environment.html:1.2 Thu May 8 11:39:45 2003
+++ avida/current/doc/environment.html Sat May 24 16:19:14 2003
@@ -434,3 +434,8 @@
REACTION XOR xor process:resource=resXOR:value=8.0:frac=0.0025
REACTION EQU equ process:resource=resEQU:value=16.0:frac=0.0025
</pre>
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/events.html
diff -u avida/current/doc/events.html:1.3 avida/current/doc/events.html:1.4
--- avida/current/doc/events.html:1.3 Thu May 8 11:39:45 2003
+++ avida/current/doc/events.html Sat May 24 16:19:14 2003
@@ -257,3 +257,8 @@
Quit the current run.
</menu>
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/genesis.html
diff -u avida/current/doc/genesis.html:1.1 avida/current/doc/genesis.html:1.2
--- avida/current/doc/genesis.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/genesis.html Sat May 24 16:19:14 2003
@@ -421,3 +421,8 @@
a new lineage will be created. I'll let you read the genesis file
itself to see the methods.
</table>
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/index.html
diff -u avida/current/doc/index.html:1.2 avida/current/doc/index.html:1.3
--- avida/current/doc/index.html:1.2 Fri Feb 7 13:33:09 2003
+++ avida/current/doc/index.html Sat May 24 16:19:14 2003
@@ -1,4 +1,3 @@
-<html>
<title>Index of Avida Documentation</title>
<h1 align=center>Index of Avida Documentation</h1>
@@ -43,4 +42,8 @@
<p>
<a href="cvs.html">CVS - Concurrent Versions System</a><br>
<a href="screen.html">The "screen" Virtual Terminal</a><br>
-</html>
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/inst_set.html
diff -u avida/current/doc/inst_set.html:1.1 avida/current/doc/inst_set.html:1.2
--- avida/current/doc/inst_set.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/inst_set.html Sat May 24 16:19:14 2003
@@ -234,3 +234,8 @@
If a template is present, it will keep turning in that direction until either
it has made a full 360 degree turn, or else it finds an organism that
possesses the complement template.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/level_map.html
diff -u avida/current/doc/level_map.html:1.1 avida/current/doc/level_map.html:1.2
--- avida/current/doc/level_map.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/level_map.html Sat May 24 16:19:14 2003
@@ -110,3 +110,8 @@
</table>
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/print_data.html
diff -u avida/current/doc/print_data.html:1.1 avida/current/doc/print_data.html:1.2
--- avida/current/doc/print_data.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/print_data.html Sat May 24 16:19:14 2003
@@ -58,4 +58,8 @@
<tr><td><tt>ave_species_age</tt> <td>Average Species Age
<tr><td><tt>max_fitness</tt> <td>Maximum Fitness in Population
<tr><td><tt>max_merit</tt> <td>Maximum Merit in Population
-</table>
\ No newline at end of file
+</table>
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/screen.html
diff -u avida/current/doc/screen.html:1.1 avida/current/doc/screen.html:1.2
--- avida/current/doc/screen.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/screen.html Sat May 24 16:19:14 2003
@@ -120,3 +120,8 @@
<p>
You can then use the arrow keys to move the cursor around on the screen, and
press enter on a link to obtain more information on a topic.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
Index: avida/current/doc/structure.html
diff -u avida/current/doc/structure.html:1.1 avida/current/doc/structure.html:1.2
--- avida/current/doc/structure.html:1.1 Sun Jul 28 18:19:36 2002
+++ avida/current/doc/structure.html Sat May 24 16:19:14 2003
@@ -506,3 +506,8 @@
a <tt><font color="#008844">config/</font></tt> sub-directory under here
with additional, optional configuration files that you may want to look at
to see other possible pre-configured settings.
+
+<br><hr>
+Project hosted by:<br>
+<a href="http://sourceforge.net"><img src="http://sourceforge.net/sflogo.php?group_id=46761&type=2" width="125" height="37" border="0" alt="SourceForge.net"/></a>
+
\ No newline at end of file
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