[Avida-cvs] avida/current/source/main CVS commit

[Dr. Charles A. Ofria]

Update of /cvsroot/avida/avida/current/source/main
In directory usw-pr-cvs1:/tmp/cvs-serv9824

Modified Files:
	analyze.cc analyze.hh 
Log Message:
Re-organized several analyze commands to be in a more logical order.

Added in a new command to analyze mode called "MAP_MUTATIONS".  It will try
all possible single mutations on the loaded genotypes, and then map out the
results in a chart -- the columns are the possible instructions to mutate to,
and the rows are the lines of the genome.  The positions in the chart
indicate the fitness of that mutation.  In html mode, these fitness values
are color coded for quick reference.

There are also some summary statistcs columns.

I recommend running the command as:
  MAP_MUTATIONS mutations/ html

This will use HTML output, and place everything in the mutations directory.